PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002189.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 429aa MW: 48013.4 Da PI: 7.5242

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002189.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.7	2.8e-13	70	126	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g Cse_sc002189.1_g010.1 70 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 126 57*****************6666777775555599****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MDTGGAEPVM KSEGSGEGET SEVVGKGSNY QQQLMVKYRG VIKKSRKERG CTAKERISKM 60 PPCAAGKRSS IYRGVTRHRW TGRYEAHLWD KSTWNQNQNK KGKQGAYDDE EAAARAYDLA 120 ALKYWGPGTL INFPVTDYTR DVEEMQNLSR EDYLASLRRK GSGFSRGASK CRGASSSKWD 180 SPLGRISGAD YNNCMQHGED ATTESEYVSG FCMDRKIDLT PYIKWWGPNK SRQAESHGKS 240 SEETNYGSSE DIGSELKQPE WITQPTEPYQ LPRLGVSTHE EKQHKRSSVS AMSILTRSAA 300 YKSLQEKALK KEEKEVENDE NENKININKM DYGKAVEKSN HEVASEGFGV ALGMEGGGMP 360 LQRNTYPLAP FLSAPLMTNY NTVDPLTDPI LWSTLVSSVR TRSSQPVEVT KTESSSDYTF 420 FQQEDMLPT

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MDTGGAEPVM KSEGSGEGET SEVVGKGSNY QQQLMVKYRG VIKKSRKERG CTAKERISKM  60
PPCAAGKRSS IYRGVTRHRW TGRYEAHLWD KSTWNQNQNK KGKQGAYDDE EAAARAYDLA  120
ALKYWGPGTL INFPVTDYTR DVEEMQNLSR EDYLASLRRK GSGFSRGASK CRGASSSKWD  180
SPLGRISGAD YNNCMQHGED ATTESEYVSG FCMDRKIDLT PYIKWWGPNK SRQAESHGKS  240
SEETNYGSSE DIGSELKQPE WITQPTEPYQ LPRLGVSTHE EKQHKRSSVS AMSILTRSAA  300
YKSLQEKALK KEEKEVENDE NENKININKM DYGKAVEKSN HEVASEGFGV ALGMEGGGMP  360
LQRNTYPLAP FLSAPLMTNY NTVDPLTDPI LWSTLVSSVR TRSSQPVEVT KTESSSDYTF  420
FQQEDMLPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.1	1e-123	AP2 family protein