PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002292.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 446aa MW: 48185.1 Da PI: 6.9846

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002292.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.4e-11	40	65	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++r+G C yG+rC+F+H++ Cse_sc002292.1_g060.1 40 DEADCIYYLRNGVCGYGSRCRFNHPR 65 6799********************96 PP
2	zf-CCCH	29.5	1.3e-09	104	124	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++++rtG Ck+G++Ck++H++ Cse_sc002292.1_g060.1 104 QYYMRTGLCKFGSSCKYHHPR 124 59*****************96 PP
3	zf-CCCH	35.4	1.8e-11	145	170	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ Cse_sc002292.1_g060.1 145 GEKECSYYVKTGQCKFGVTCKFHHPQ 170 7899********************97 PP
4	zf-CCCH	34.1	4.6e-11	299	324	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+++ +tG Ck+G++C+++H+ Cse_sc002292.1_g060.1 299 PGEPECQHYVKTGDCKFGSSCRYHHP 324 5799*********************9 PP
5	zf-CCCH	34.7	3e-11	346	371	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +lC ++a++G Ck+G++CkF H++ Cse_sc002292.1_g060.1 346 GSPLCLHYAQNGVCKFGPSCKFDHPM 371 679*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MSDPVTEWSD GIGLEEPLWK LGLGEDENEN ENEVYPERPD EADCIYYLRN GVCGYGSRCR 60 FNHPRDRAGS LVGAMRGSDG EYPERIGQPV CQYELYANYV TQLQYYMRTG LCKFGSSCKY 120 HHPRQGTGSS SPVALNVSGY PLRPGEKECS YYVKTGQCKF GVTCKFHHPQ PTSMVPSPAP 180 AVSVGQLSPL PSAVYQNLQS SVISSQPYGV LAGNWPVARP PVLPGSYLPG TYGPMLVPPG 240 MVPFPGWNPY QAPIHPAVSP NPQPILGGGS VYAMTQLSTS FPSYSLTNSQ KENVFPQRPG 300 EPECQHYVKT GDCKFGSSCR YHHPLDLIVP NTNFGLSPMG LPLRPGSPLC LHYAQNGVCK 360 FGPSCKFDHP MGTLSYSPSA SSLSDMPVVP YPVGSYVATL ALSSSSSELR PEHTTVGSSF 420 SKSMQISQST GSSNSTTHGG GDTHSN

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MSDPVTEWSD GIGLEEPLWK LGLGEDENEN ENEVYPERPD EADCIYYLRN GVCGYGSRCR  60
FNHPRDRAGS LVGAMRGSDG EYPERIGQPV CQYELYANYV TQLQYYMRTG LCKFGSSCKY  120
HHPRQGTGSS SPVALNVSGY PLRPGEKECS YYVKTGQCKF GVTCKFHHPQ PTSMVPSPAP  180
AVSVGQLSPL PSAVYQNLQS SVISSQPYGV LAGNWPVARP PVLPGSYLPG TYGPMLVPPG  240
MVPFPGWNPY QAPIHPAVSP NPQPILGGGS VYAMTQLSTS FPSYSLTNSQ KENVFPQRPG  300
EPECQHYVKT GDCKFGSSCR YHHPLDLIVP NTNFGLSPMG LPLRPGSPLC LHYAQNGVCK  360
FGPSCKFDHP MGTLSYSPSA SSLSDMPVVP YPVGSYVATL ALSSSSSELR PEHTTVGSSF  420
SKSMQISQST GSSNSTTHGG GDTHSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-134	C3H family protein