PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc002309.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 316aa    MW: 36827.9 Da    PI: 5.9575
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc002309.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.8e-183279148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT eEd  l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Cse_sc002309.1_g020.1 32 RGPWTVEEDFALMNYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 79
                           89********************************************97 PP
2Myb_DNA-binding51.32.7e-1685128146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Cse_sc002309.1_g020.1  85 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 128
                            7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MEHKMTIRCI DMISSGGEED DQMNMMIDDL RRGPWTVEED FALMNYIAHH GEGRWNSLAR  60
CAGLKRTGKS CRLRWLNYLR PDVRRGNITL EEQLLILELH SRWGNRWSKI AQHLPGRTDN  120
EIKNYWRTRV QKHAKQLKCD VNSKQFKDTM RYLWMPRLAE RIQAANSTTT VGSFSISSTD  180
IKTTTTTYPF DQNNIQNVGT TQSVIPNTYS SDHANNHNYT RDTSRHTAVS PVSDLTDCYY  240
PISESQNQNF LQINNTVGDE FDFPIISPSA YFNREMDFEG QMEENNHWSG ENNGDFSDSL  300
WNVEDILYLE QHFNSM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.16e-90MYB family protein