PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002337.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 255aa MW: 29309.1 Da PI: 8.084

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002337.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	100	121	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C++ ++++ +L H + H Cse_sc002337.1_g030.1 100 CSVCSRAYPTSRLLSIHVSEvH 121 99***************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MMMVDNNLQT QTQFKSEFKH LFPVIRRFSP DDPFFASGNI ERELLAKQVA LDITEDEKQQ 60 LLYMEDESSE VFCPIVGCGA HLKSLAEFED HYNARHTACC SVCSRAYPTS RLLSIHVSEV 120 HDSFFQAKVA RGYPMYECLV EGCGEKLKSY KSRHQHLIDK HSFPSSFEFY KKTRPSKKDR 180 VKKNQRKQHQ TTVTRDDEEG SSAMQIEEET LNDLVSAVSK LKTSEDSTPS AISFGRRHTR 240 GVTFVPRAVR QETKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	182	KKTRPSKKDRVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	1e-106	C2H2 family protein