PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc002402.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 657aa    MW: 72563.1 Da    PI: 7.2344
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc002402.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.3e-24115216199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++v
  Cse_sc002402.1_g030.1 115 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIV 200
                            89****************************996555555..8********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F+  + +++ l+v+++r+
  Cse_sc002402.1_g030.1 201 FM--RAENGDLCVGIRRA 216
                            **..4488999****997 PP
2Auxin_resp111.39.5e-37281361483
             Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             a+++++Fev+Y+Prast+eF+vkv+++++al++++++GmRfkmafetedss++++ +Gtv++v+ ldp+ WpnS+Wr+L+
  Cse_sc002402.1_g030.1 281 LAANGQPFEVTYYPRASTPEFCVKVSSLSAALRIQWCAGMRFKMAFETEDSSRISWfMGTVSSVQVLDPFLWPNSPWRLLQ 361
                            6899***************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    
MNGVERSVDP RLWHACAGGM IQIPLPNSKV AYFPQGHAEH TLTNVDFSGM PRVPAFVLCR  60
VVDVKFLADF ETDEVYAKIR LSPLGNSFNG YDYDDEVTLV ETHSGSESSD KPTSFAKTLT  120
QSDANNGGGF SVPRYCAETI FPRLDYSADP PVQTVIAKDV HGEIWKFRHI YRGTPRRHLL  180
TTGWSSFVNH KKLVAGDSIV FMRAENGDLC VGIRRAKRGG IGAPDVPSGW SSTSGNLPSS  240
YGGVSSFLRE NDNKLMRNGR NINPSGRGKV RPEAVLEATC LAANGQPFEV TYYPRASTPE  300
FCVKVSSLSA ALRIQWCAGM RFKMAFETED SSRISWFMGT VSSVQVLDPF LWPNSPWRLL  360
QVNWDEPDLL QNVKRVSPWL VELVSNMPLV HLSPFSPHRK KLRLPQPPDL PQDDFTLPSF  420
SGNPHTPSSH FRSAGIQGAR HARFEIPLSD LNLTHKPQLG LFPSSKDPDD DISCLLSIGT  480
SSPISNKNND KVKTQPMFLL FGQPIHIEQQ TSTDCISDES SQFPVGTHSS DESANGILQP  540
NVLQKRCCEV FLGSQDMGRT LDLSVIGSYE ELYRTLASWF GIVRFNDLTC VVYEDSAGAV  600
KRIGDEFFSE FVMKAKRLTI LMGAYGHDDA RKPITGLGTA GRAIVSSKQT GVTSIFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0ARF family protein