PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002473.1_g090.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

GATA

Protein Properties

Length: 549aa MW: 60501.3 Da PI: 7.2416

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002473.1_g090.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.5	1e-14	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Cse_sc002473.1_g090.1 7 CCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41 99************55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MGKHGPCCHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLVNYTPLHA RAEPDDFEDR 60 RVSRVKTISI KNKEAKILKR KQNYDNVVGR SASIMLGSGS GGGGVIYDHQ TQGFRKVYDE 120 DMSNRSSSGS AISNSDGYMQ LGSGDASDLT GSQAQSSVVW DTMVPSRKRT CVSRGLKQSP 180 VEKLTKDLHT ILHEQRSYFS GSSEEDLIFE YNTPMVSVEI GHGSVLMRHP SSTREEESEA 240 SSLSVDTKNE AYSGLTTFPV YNANKGGNFS SRRNDASKKI VNQDHVKRDN DEKLQLLMNQ 300 TSQLCNIDLK DIINFEEFTS HLTNDEQQQL QKYLSLVDTD QVPDSLKSMF DSPQFKENLS 360 SFQKLLAEGV FDLSSPMVKN EGGRTLKKLA LGSATKADWV EKYNLLQDAK CKYDSGGSVI 420 GGIQNSVTPG HSVNAKRSQD AQFQSYQGPK TTMKSPKRTS TKARYDHKEV MDNDGPGFSP 480 RSLFALPPDH SSLIESLRYA DENSEHDLLL DVPSNTSFPQ AELLLPTSSF GVAQASTSSS 540 SIYHSFAGH

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MGKHGPCCHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLVNYTPLHA RAEPDDFEDR  60
RVSRVKTISI KNKEAKILKR KQNYDNVVGR SASIMLGSGS GGGGVIYDHQ TQGFRKVYDE  120
DMSNRSSSGS AISNSDGYMQ LGSGDASDLT GSQAQSSVVW DTMVPSRKRT CVSRGLKQSP  180
VEKLTKDLHT ILHEQRSYFS GSSEEDLIFE YNTPMVSVEI GHGSVLMRHP SSTREEESEA  240
SSLSVDTKNE AYSGLTTFPV YNANKGGNFS SRRNDASKKI VNQDHVKRDN DEKLQLLMNQ  300
TSQLCNIDLK DIINFEEFTS HLTNDEQQQL QKYLSLVDTD QVPDSLKSMF DSPQFKENLS  360
SFQKLLAEGV FDLSSPMVKN EGGRTLKKLA LGSATKADWV EKYNLLQDAK CKYDSGGSVI  420
GGIQNSVTPG HSVNAKRSQD AQFQSYQGPK TTMKSPKRTS TKARYDHKEV MDNDGPGFSP  480
RSLFALPPDH SSLIESLRYA DENSEHDLLL DVPSNTSFPQ AELLLPTSSF GVAQASTSSS  540
SIYHSFAGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-118	GATA family protein