PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002586.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 797aa MW: 88643.3 Da PI: 5.4521

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002586.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	39.7	9.4e-13	498	539	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i+le+l+++F++++kdAAk++g Rq+GI+RWP+Rkik++ Cse_sc002586.1_g050.1 498 EKTITLEMLRQHFAGSLKDAAKNMG---------GRQHGIQRWPSRKIKKV 539 799*******************9.........6************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 797 aa Download sequence
MDENVFTFEN PSDSLMDFDY MDELLLDGCW LQATDGSEIL NNNTSASNPP FDPSVQWPKL 60 DSNTENPEPN DNLLAPEGNS SKSHVKSLIT LLNQSENLAE QSKRWWIAPQ ASSGPSISVM 120 ERLIYAIDNI KHYTVDKNVL IQLSNYRNIS ETYIFPAEGD AKESVGLPGR VFKEKVPEWT 180 PDVRLFKIEE YPRVSHAQAQ GVRGSVAGVR GSVAVPVFYQ DNESCIGVFE VIMPTRKSNY 240 SSEIQSVCKA LEAFDLRSSE DSNTQKIKVN NGFYHPALSE ICEALQSACT IHNLPLAQTW 300 IPCIQQDNKG GCRHSNENLI RCISSVDSAS YVSDPRFKDF QEACSEHHLF IDQGVVGKTF 360 TTMGPCYSSD VTLYKKTDYP LAHHASIFDL HAAVAIRLRT TYAATVDFVL EFFLPVDCKN 420 TEDQQGIINS LLIIIQKVCG SLRFVTEMEL QEGVNDGLIV GSDTETMPRV QEIDGPGPGS 480 GSGSGSGVEK RRAGAKLEKT ITLEMLRQHF AGSLKDAAKN MGGRQHGIQR WPSRKIKKVG 540 HSLRKIQLVM DSVHGGSGSF QIESFYSNFL KLASPDPSKP TNLPFSTTKI VTLDLKTTDG 600 ATSGSPSSSS GHSFSGRLHQ VPLCDEDTGD GAHKRTKSED TGEGTHKRTK SDTDIHTFCA 660 SNDQDQDQDQ DQDEETKSLT EPPKCQKLPP KPRIKPEGHL WRVKVTFGEE NIRFRMQKGW 720 GYNELVQETA KRFSLNDISG YQLRYLDDDS EWVLLTCDAD VEEYIYVYRS FKGGTIRLTL 780 REPQLRVGSS LGSNALL

Sequence ? help Back to Top

Protein Sequence Length: 797 aa Download sequence

MDENVFTFEN PSDSLMDFDY MDELLLDGCW LQATDGSEIL NNNTSASNPP FDPSVQWPKL  60
DSNTENPEPN DNLLAPEGNS SKSHVKSLIT LLNQSENLAE QSKRWWIAPQ ASSGPSISVM  120
ERLIYAIDNI KHYTVDKNVL IQLSNYRNIS ETYIFPAEGD AKESVGLPGR VFKEKVPEWT  180
PDVRLFKIEE YPRVSHAQAQ GVRGSVAGVR GSVAVPVFYQ DNESCIGVFE VIMPTRKSNY  240
SSEIQSVCKA LEAFDLRSSE DSNTQKIKVN NGFYHPALSE ICEALQSACT IHNLPLAQTW  300
IPCIQQDNKG GCRHSNENLI RCISSVDSAS YVSDPRFKDF QEACSEHHLF IDQGVVGKTF  360
TTMGPCYSSD VTLYKKTDYP LAHHASIFDL HAAVAIRLRT TYAATVDFVL EFFLPVDCKN  420
TEDQQGIINS LLIIIQKVCG SLRFVTEMEL QEGVNDGLIV GSDTETMPRV QEIDGPGPGS  480
GSGSGSGVEK RRAGAKLEKT ITLEMLRQHF AGSLKDAAKN MGGRQHGIQR WPSRKIKKVG  540
HSLRKIQLVM DSVHGGSGSF QIESFYSNFL KLASPDPSKP TNLPFSTTKI VTLDLKTTDG  600
ATSGSPSSSS GHSFSGRLHQ VPLCDEDTGD GAHKRTKSED TGEGTHKRTK SDTDIHTFCA  660
SNDQDQDQDQ DQDEETKSLT EPPKCQKLPP KPRIKPEGHL WRVKVTFGEE NIRFRMQKGW  720
GYNELVQETA KRFSLNDISG YQLRYLDDDS EWVLLTCDAD VEEYIYVYRS FKGGTIRLTL  780
REPQLRVGSS LGSNALL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	1e-158	Nin-like family protein