PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002605.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 529aa MW: 58964.5 Da PI: 9.2867

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002605.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24	6.6e-08	270	290	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C +fa+ G C+yG CkF H Cse_sc002605.1_g040.1 270 RPCINFAK-GSCRYGIVCKFLH 290 69****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MYCTSLFRSI HAPVPLQYGK VHNANYSVKR EMLFGFQTFA TKDPKVFDKH EEFVSPYICV 60 TGLSPILDHS FYDVSKFIHG STSGATTSTS TPLTPEEQKV DKIILSWIFS TLSDSLQKRL 120 VNARPKSAQA SWDFISDLVK DNKQSRTSAL KSELRSIKLG VLSMEAYFQK IELIMTILAS 180 LDSPVGDEDV VHYALDGLPE KYNQVCGYMH YKDMFLDFKT VRSMLITEEM RLKSKSIPLS 240 VDSSSSSPLV LMADKGMPRN PTNPKVKSWR PCINFAKGSC RYGIVCKFLH NGNVKTPSNT 300 IASKVTNNTE DAILNVLTRL GITGSHTLPI VQNSNTIRPN TTPTAYFTYC SPIGPFPYNP 360 SPSIRPTTTI GPPPGFGPPT VHHPFTTYPG PHYLTTQPIT PHHSTHYPPA APIQYQNPDL 420 NAPHPHPTTN LTPPVQPPPT APTMTSSTTL GHETLLPHAF TNGTLHDPTT GDRKALLKYV 480 LWSNDQKRRI RRLQCAGKEF VVLVTRLFVT ERFRRCDIFE VEISDSALG

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MYCTSLFRSI HAPVPLQYGK VHNANYSVKR EMLFGFQTFA TKDPKVFDKH EEFVSPYICV  60
TGLSPILDHS FYDVSKFIHG STSGATTSTS TPLTPEEQKV DKIILSWIFS TLSDSLQKRL  120
VNARPKSAQA SWDFISDLVK DNKQSRTSAL KSELRSIKLG VLSMEAYFQK IELIMTILAS  180
LDSPVGDEDV VHYALDGLPE KYNQVCGYMH YKDMFLDFKT VRSMLITEEM RLKSKSIPLS  240
VDSSSSSPLV LMADKGMPRN PTNPKVKSWR PCINFAKGSC RYGIVCKFLH NGNVKTPSNT  300
IASKVTNNTE DAILNVLTRL GITGSHTLPI VQNSNTIRPN TTPTAYFTYC SPIGPFPYNP  360
SPSIRPTTTI GPPPGFGPPT VHHPFTTYPG PHYLTTQPIT PHHSTHYPPA APIQYQNPDL  420
NAPHPHPTTN LTPPVQPPPT APTMTSSTTL GHETLLPHAF TNGTLHDPTT GDRKALLKYV  480
LWSNDQKRRI RRLQCAGKEF VVLVTRLFVT ERFRRCDIFE VEISDSALG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	486	492	QKRRIRR