PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002808.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 398aa MW: 43828.5 Da PI: 9.7188

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002808.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.4	3.1e-07	165	187	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cgk+F+ ++nL+ H + H Cse_sc002808.1_g030.1 165 TCHKCGKVFRKWENLEAHHLSkH 187 7*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MSTVWFSLKK SFHCKSDSSD VINPKSKTKT THLTTILTRK RHQWGCSRSI KDVINGGSKR 60 HHDNPVNCSP RSIGSSEFLN PITHEVILNN ASKCELKIST FSNGLHDSGG EFVGTLMPGT 120 PGPGGIKGVE MGHLGKNGNG LVKSRRSLEK EKEKDCGAFS GGGVTCHKCG KVFRKWENLE 180 AHHLSKHAVT ELIEGDSSRK IVEIICRSSW LKSDNNSGRI EKILKVHNMQ KTLARFEEYR 240 ELVKTKASKL PKKHPRCLAD GNELLRFYGA TITCSLGING VSSLCVSDKC CVCRIIRDGF 300 STKRELKGGI GVFTSSTSAR AFESIEVFEE NPDTRKALIV CRVIAGRVHR PLENIQEMAG 360 QSGFDSLAGK VGLYSNIEEL YLLSPRALLP CFVVICKP

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MSTVWFSLKK SFHCKSDSSD VINPKSKTKT THLTTILTRK RHQWGCSRSI KDVINGGSKR  60
HHDNPVNCSP RSIGSSEFLN PITHEVILNN ASKCELKIST FSNGLHDSGG EFVGTLMPGT  120
PGPGGIKGVE MGHLGKNGNG LVKSRRSLEK EKEKDCGAFS GGGVTCHKCG KVFRKWENLE  180
AHHLSKHAVT ELIEGDSSRK IVEIICRSSW LKSDNNSGRI EKILKVHNMQ KTLARFEEYR  240
ELVKTKASKL PKKHPRCLAD GNELLRFYGA TITCSLGING VSSLCVSDKC CVCRIIRDGF  300
STKRELKGGI GVFTSSTSAR AFESIEVFEE NPDTRKALIV CRVIAGRVHR PLENIQEMAG  360
QSGFDSLAGK VGLYSNIEEL YLLSPRALLP CFVVICKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-159	C2H2 family protein