PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002898.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 628aa MW: 69001.3 Da PI: 8.8305

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002898.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	174	196	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cse_sc002898.1_g040.1 174 FVCEICSKGFQRDQNLQLHRRGH 196 89*******************88 PP
2	zf-C2H2	13.7	0.00018	250	272	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k + +s+ k H++t+ Cse_sc002898.1_g040.1 250 WKCDRCSKKYAVQSDWKAHQKTC 272 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence
MSALDQRPWY KHLRSSTNVR VYAVTINPSA SISRGHDGCN AHRSTSSVAP LCRAQRALLL 60 QKHVFCRTSL SRTSATEARL LSHLFVAHSA HFCHRSTSSV APCCVATGNI DELETQNQHH 120 LSELKTNLYG ANSSSNGSTS LPPAKKKRNL PGTPDPTAEV IALSPTTLMA TNRFVCEICS 180 KGFQRDQNLQ LHRRGHNLPW KLKQRTSTDT RKRVYVCPEP SCVHHNPARA LGDLTGIKKH 240 YSRKHGEKKW KCDRCSKKYA VQSDWKAHQK TCGTREYKCD CGTIFSRRDS FITHRAFCDA 300 LAEENNKVSQ GMLQSQQMSD HYSPSMPMNS GNGMSMGLPD FNNYNMKSQL KLHPQELQMP 360 FESINMPGGL FSSSSGTLLS NPRGLSSSTS GLELSSSNGP LGFGNLQQDN SAGGPLSGPI 420 AHMSATALLQ KAAQIGATAS HVINSPMMQK SYVTSMADPD QLSSDVPRLN PSYFDRQGPQ 480 PQGNNGLHNP SPQNAFGPGP EPKHILEAHV MNDLGIYSNI IQGDQSNELM NMEQGHQINN 540 NSDSIQGRGS SGLGRPMPGN DPLTVDFLGI GGSRSLNMQE QQQHRFGGLE ATNHQHIHAS 600 NESFQQLMNQ DSLTHEKPIW EECANFSK

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence

MSALDQRPWY KHLRSSTNVR VYAVTINPSA SISRGHDGCN AHRSTSSVAP LCRAQRALLL  60
QKHVFCRTSL SRTSATEARL LSHLFVAHSA HFCHRSTSSV APCCVATGNI DELETQNQHH  120
LSELKTNLYG ANSSSNGSTS LPPAKKKRNL PGTPDPTAEV IALSPTTLMA TNRFVCEICS  180
KGFQRDQNLQ LHRRGHNLPW KLKQRTSTDT RKRVYVCPEP SCVHHNPARA LGDLTGIKKH  240
YSRKHGEKKW KCDRCSKKYA VQSDWKAHQK TCGTREYKCD CGTIFSRRDS FITHRAFCDA  300
LAEENNKVSQ GMLQSQQMSD HYSPSMPMNS GNGMSMGLPD FNNYNMKSQL KLHPQELQMP  360
FESINMPGGL FSSSSGTLLS NPRGLSSSTS GLELSSSNGP LGFGNLQQDN SAGGPLSGPI  420
AHMSATALLQ KAAQIGATAS HVINSPMMQK SYVTSMADPD QLSSDVPRLN PSYFDRQGPQ  480
PQGNNGLHNP SPQNAFGPGP EPKHILEAHV MNDLGIYSNI IQGDQSNELM NMEQGHQINN  540
NSDSIQGRGS SGLGRPMPGN DPLTVDFLGI GGSRSLNMQE QQQHRFGGLE ATNHQHIHAS  600
NESFQQLMNQ DSLTHEKPIW EECANFSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-105	C2H2 family protein