PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003013.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family C3H
Protein Properties Length: 346aa    MW: 38692.7 Da    PI: 9.0073
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003013.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.89.8e-15270294226
                            -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                            ktelC+ +++tG C+yGd C+FaHg
  Cse_sc003013.1_g010.1 270 KTELCNKWQQTGACPYGDHCQFAHG 294
                            9***********************8 PP
2zf-CCCH17.95.6e-06307331125
                            --S---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                            ykte Cr  +++  C+yG rC+F H
  Cse_sc003013.1_g010.1 307 YKTEVCRMVLAGDPCPYGHRCHFRH 331
                            9**********55**********88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MQSFSDFPYT GADDDSKLWS SFINQTDGGA YDYEAPLYSS IPAMTPPRHY TVTPNTTTLP  60
LPLVPPRLPM VADYSRRHSL DFAPFQDLIE RRNWCLANLR LTAKEAEALR QENVNLQMAN  120
SELNKQLSHL QQQAASATAS ASVSGSASGS SMQNYANASV FQSVNSVTDC FGRMRIGDKR  180
SSVIDKRAAR GVENVDPVKK LDVERVKLPK SISVRSNGYM KGAQAGDGSV SRARAVDRIK  240
TASDSQKVFV RGKKEEEPLE LKVYNQGMTK TELCNKWQQT GACPYGDHCQ FAHGIEELRP  300
VIRHPRYKTE VCRMVLAGDP CPYGHRCHFR HALTEEEKLM SRRINN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.16e-67C3H family protein