PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003046.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 338aa MW: 39460.7 Da PI: 4.2497

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003046.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.6	1e-10	124	193	1	69
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegek 69 +W+++ + +L+e+ ++ +++r++l++ +W ev++k++e ++e++ qC+ ++e l+++ykk+k+ ++ Cse_sc003046.1_g010.1 124 EWSENATFVLLEVWGDRYMQSGRRSLRGEDWVEVAEKISEMcKMEINDGQCRTRFETLKQKYKKEKAKME 193 5***********************************775378*******************99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MDYNSSIRTR RPIRNTNNYT NNYNDYDNDN DFEPPESPLA PPINNRFNYH QHQHVNIVND 60 DSDNSLEDDN DEDDINNNNN EYQQQYYNVG ETSTRRHKKK RRLENLVGGY GYAPRGNVSN 120 VMDEWSENAT FVLLEVWGDR YMQSGRRSLR GEDWVEVAEK ISEMCKMEIN DGQCRTRFET 180 LKQKYKKEKA KMEGSGMGHG QHNGLPCGVD SGEYVFMNTK VYLNKSNAFD EMRDSPGESE 240 VDEDEDDDEE DEDGDGLNEE DEEGFKLLAE SVQNFGEIYE KIEGRKRQQM LELEKMRMDF 300 QRELELQKKV ILERAQAEIA KIREEDDEDA NSVENLSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	102	KKKRR
2	98	103	KKKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	4e-65	Trihelix family protein