PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003060.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family Nin-like
Protein Properties Length: 425aa    MW: 47038.1 Da    PI: 6.0509
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003060.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK216.7e-072372721045
                 RWP-RK  10 lskyFslpikdAAkeLgvclTvLKriCRqyGIkRWP 45 
                            l  yF l+   AA+eL +   +   +CR+ GI+ WP
  Cse_sc003060.1_g030.1 237 LVPYFGLSSVVAANELRLKKGTFRNTCRKAGIPEWP 272
                            5679******************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MAAYSTLNPT CTQPSKGALW KLKISDGDSF RRSPNFHYIC VPTPQGRKQQ IKSTIRNLPL  60
YGHNFLVQFW AATKIGKTVL LTTTGQPFGL SGINEELELY RQGCLHHKLY VHPEKRIAVG  120
LPGRVFLNST PEQTQNVHNI PNDQRPPCVD ATIFTRIWSS FAVPVIVDAQ CVGVLDFVTD  180
KPTHSYDCII GKVREALQQA GLQCSIKTDC PKTCVSLNSK IRIRRTQSFS LSYYFRLVPY  240
FGLSSVVAAN ELRLKKGTFR NTCRKAGIPE WPGLPSTNTR ASSAPDQTRV SQTVSETSSV  300
GTLQVDDSVS SRDEGISPTP IASPSENQID QTVPGTSPNP DDFNSCWDGG VYEGPLELFM  360
PTNASATETE INEIASDTSF TEALLNQQHD GIEYPGIETK AVEDFDHYMF MDSLDTIFED  420
APLMI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.15e-13Nin-like family protein