PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003123.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family LBD
Protein Properties Length: 145aa    MW: 16396.8 Da    PI: 7.8231
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003123.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.82.1e-3951041100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +Ca+Ck+ rr+C+++Cv+apyfp+++p++f +vhk++Gasn+ k+++++p + r da++sl yeA++r++dPvyG++g+i+ l++q++
  Cse_sc003123.1_g010.1   5 RCAVCKYFRRRCPSSCVFAPYFPNDNPQRFIFVHKIYGASNIAKMIEETPMHLRADAIDSLHYEAKCRIQDPVYGCAGIISLLHHQIQ 92 
                            6*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                             ++++la++++e
  Cse_sc003123.1_g010.1  93 VAQSQLAKAQAE 104
                            ********9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MTPPRCAVCK YFRRRCPSSC VFAPYFPNDN PQRFIFVHKI YGASNIAKMI EETPMHLRAD  60
AIDSLHYEAK CRIQDPVYGC AGIISLLHHQ IQVAQSQLAK AQAEIAFLDA NFALDAPRPR  120
PGQSLLQLNN GVDYGLDDPV NPWFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.12e-49LBD family protein