PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003129.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MIKC_MADS

Protein Properties

Length: 142aa MW: 16795.9 Da PI: 10.2276

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003129.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.2	5.6e-15	2	38	15	51
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kR+ngi+KKA+ + vLCd++v+ +i+ s+ k+yey+s Cse_sc003129.1_g020.1 2 KRKNGIIKKAKDIIVLCDVNVSFVIYVSSSKMYEYCS 38 9**********************************96 PP
2	K-box	67.9	3.4e-23	50	123	1	74
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 yq+ g++l++ak+e+l++e++++kke+ ++q e+Rhl+G+ ++sL+++ L e++Le++l++iR+kK+++l+ Cse_sc003129.1_g020.1 50 YQRIYGNKLWDAKHENLKNEIDRIKKENVSMQIELRHLKGKYIKSLNYEKLIAYEDALENGLTNIREKKDHILK 123 67778899***************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence
MKRKNGIIKK AKDIIVLCDV NVSFVIYVSS SKMYEYCSPK TNLIDMLDRY QRIYGNKLWD 60 AKHENLKNEI DRIKKENVSM QIELRHLKGK YIKSLNYEKL IAYEDALENG LTNIREKKDH 120 ILKIKVFKIG ILPRIVFVFA RS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	1e-49	MIKC_MADS family protein