PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003130.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 435aa MW: 48904 Da PI: 6.6828

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003130.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.8e-18	162	208	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+++vk +G W++Ia++m gR +kqc++rw+++l Cse_sc003130.1_g040.1 162 KGQWTEEEDSKLIRLVKHYGEQKWALIAEKMA-GRAGKQCRERWRNHL 208 799***************************.***********97 PP
2	Myb_DNA-binding	43.8	5.9e-14	214	256	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eE + l++a+++ G++ W+ Ia+ + gRt++++k+ w+ Cse_sc003130.1_g040.1 214 KDEWSEEEVKMLIEAHQKVGNK-WAVIAKLIT-GRTENSIKNQWN 256 679*****************.****9.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MENGSHGGYD GGHVGSGGGG FSNYINYQNR HSWYKPVPPP LTAIDRFLWG QTQNDQSQSQ 60 NQKSNELFVS LVPGFSCYSS GINNESGICL APYLPMTKNF MVDDDGDLFI NNIGECLSLD 120 ELRSYPNYAQ NRESNQVIKP EKVFTNSVKK VKGGAISKVL IKGQWTEEED SKLIRLVKHY 180 GEQKWALIAE KMAGRAGKQC RERWRNHLRP DIKKDEWSEE EVKMLIEAHQ KVGNKWAVIA 240 KLITGRTENS IKNQWNATKR KQNSSRKNKK NDTKNKKPQS TLLQDYIRSK TSDQSLDSSS 300 STTTITTANS TVIPELSNLS NNDSDPSLEI TQTNDDELDF IQTFFQTTNS SETSSHVIEP 360 KSPTISYQLG FSSFSSTLND ENSNMYFNNY PEEDSSKAHI ALDSNHFEET IAMPSSKDQG 420 YHGDGSSSSA KKIWI

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MENGSHGGYD GGHVGSGGGG FSNYINYQNR HSWYKPVPPP LTAIDRFLWG QTQNDQSQSQ  60
NQKSNELFVS LVPGFSCYSS GINNESGICL APYLPMTKNF MVDDDGDLFI NNIGECLSLD  120
ELRSYPNYAQ NRESNQVIKP EKVFTNSVKK VKGGAISKVL IKGQWTEEED SKLIRLVKHY  180
GEQKWALIAE KMAGRAGKQC RERWRNHLRP DIKKDEWSEE EVKMLIEAHQ KVGNKWAVIA  240
KLITGRTENS IKNQWNATKR KQNSSRKNKK NDTKNKKPQS TLLQDYIRSK TSDQSLDSSS  300
STTTITTANS TVIPELSNLS NNDSDPSLEI TQTNDDELDF IQTFFQTTNS SETSSHVIEP  360
KSPTISYQLG FSSFSSTLND ENSNMYFNNY PEEDSSKAHI ALDSNHFEET IAMPSSKDQG  420
YHGDGSSSSA KKIWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	7e-55	MYB family protein