PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003144.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 755aa MW: 85456.6 Da PI: 6.4661

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003144.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	55.3	1.3e-17	451	494	3	46
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 ++isle+++k+F +pi +AA +L+++ ++LKriC +GI+RWP+ Cse_sc003144.1_g030.1 451 SSISLEEIKKHFGKPIGEAAANLNISRSTLKRICKAHGIPRWPY 494 589****************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence
MILDDLKSRY SCISEPLPFE NDPQFLSRLW VFTSFSKMMV DLNSIDLQMI KEKITSVLSA 60 LRFREQHVLV QFWSPVTVEN RCLLMTLNQP FGLGVVHDEG IYLHRLKSEQ DMFYVDEELG 120 SPARVYRKKS PEWSFDIQTL STRHSNKDLA ACYNIHGYIM LPISEPNSGC CVGVLELVTS 180 SSNYADYAFE VQEISRALKE ENLKSPNVFE DPIFYKQVSN ERRCHELAEI GIALKTVCDT 240 HKLPLAQTWS LSGKNSFVAS SGQLEQTCSS FKKSCIGKIC MSTTNLPFYV RDMRMWGFHE 300 ACIERHLEKS CGVVGRSLLT CGSWFCKDVT ELDEDDYPLV PFARMSRLTS CLAIYTKSIE 360 LASEYVIEFF LPTLGKNEAD QQILVKTLKQ QIKNVFQLGI TSTIQDVSDI PRMSVNIENE 420 PSNSGIVGAC QAVVPYLEKG VTYRKRKSSG SSISLEEIKK HFGKPIGEAA ANLNISRSTL 480 KRICKAHGIP RWPYKMKRTD ISVGLEETSE PFEETMKVIE DRLLEVPRMS ETSEWMSETS 540 DSESCNSGAV GTSHGVVPYW KRRTTQRRRK RSERVITLEQ IQNHTGKPVD DATAILNDSI 600 SMPPYWHGPD ERLGTRNLTH DPATVAQHGK SNSTHQQEQT NMPDVRAQPK MSVIEQYIET 660 TAANTVKDLT VKVTYQENTV KFPFILSDGL AKLEKLIAMR FRLSLGSFKL KYEDNDGDMI 720 LVACDTDLEA SVGDSRQPVD PTVIRLLVID RPSEP

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence

MILDDLKSRY SCISEPLPFE NDPQFLSRLW VFTSFSKMMV DLNSIDLQMI KEKITSVLSA  60
LRFREQHVLV QFWSPVTVEN RCLLMTLNQP FGLGVVHDEG IYLHRLKSEQ DMFYVDEELG  120
SPARVYRKKS PEWSFDIQTL STRHSNKDLA ACYNIHGYIM LPISEPNSGC CVGVLELVTS  180
SSNYADYAFE VQEISRALKE ENLKSPNVFE DPIFYKQVSN ERRCHELAEI GIALKTVCDT  240
HKLPLAQTWS LSGKNSFVAS SGQLEQTCSS FKKSCIGKIC MSTTNLPFYV RDMRMWGFHE  300
ACIERHLEKS CGVVGRSLLT CGSWFCKDVT ELDEDDYPLV PFARMSRLTS CLAIYTKSIE  360
LASEYVIEFF LPTLGKNEAD QQILVKTLKQ QIKNVFQLGI TSTIQDVSDI PRMSVNIENE  420
PSNSGIVGAC QAVVPYLEKG VTYRKRKSSG SSISLEEIKK HFGKPIGEAA ANLNISRSTL  480
KRICKAHGIP RWPYKMKRTD ISVGLEETSE PFEETMKVIE DRLLEVPRMS ETSEWMSETS  540
DSESCNSGAV GTSHGVVPYW KRRTTQRRRK RSERVITLEQ IQNHTGKPVD DATAILNDSI  600
SMPPYWHGPD ERLGTRNLTH DPATVAQHGK SNSTHQQEQT NMPDVRAQPK MSVIEQYIET  660
TAANTVKDLT VKVTYQENTV KFPFILSDGL AKLEKLIAMR FRLSLGSFKL KYEDNDGDMI  720
LVACDTDLEA SVGDSRQPVD PTVIRLLVID RPSEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	561	571	KRRTTQRRRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	8e-89	Nin-like family protein