PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003308.1_g060.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 149aa    MW: 17273.7 Da    PI: 8.0756
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003308.1_g060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.41.4e-21246448
                           -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                 SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                           e +sn qvtfskRr g++KKA+ELS+LC++e+a+++fs+  k + 
  Cse_sc003308.1_g060.1  2 EKESNLQVTFSKRRSGLFKKASELSILCGVEIAIVVFSPAKKAFS 46
                           6789**********************************9988665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    
MEKESNLQVT FSKRRSGLFK KASELSILCG VEIAIVVFSP AKKAFSFGHP SVEMITDRYL  60
RENIPSSSNT SLLIESHRNA QIHELNRQLT YVDCQLDIEK NKSDELRKIR KEGQDNHWVY  120
VAGVLARKSI DHYCKKEYFE EPTFILDSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-40M-type_MADS family protein