PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003326.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 1371aa MW: 157250 Da PI: 7.0454

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003326.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.9	9.3e-20	567	671	3	90
FAR1 3 YneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkekd 73 Y++YA+e GF+vr+ +k+s ++++ + f+C ++g++ ++k + ++ +rr+ra+ r+gC+a+l++kk+ d Cse_sc003326.1_g040.1 567 YKNYAREGGFEVRRGGQKNSnDKKEDPSLKYFYCVRQGFKPNRKPEdsqtdktqktnplgatKVIKRRKRASCRCGCTAQLRLKKRPD 654 9***********98888845566678899****9999888899*******9989999***************** PP FAR1 74 gkwevtkleleHnHela 90 gk+ vtkl ++HnH+l+ Cse_sc003326.1_g040.1 655 GKYFVTKLIEKHNHSLV 671 ************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 1371 aa Download sequence
MNPQHYNITT TSEFSPFENI DEDVEYVPET QPLPNEEDED EEVQEVDPRG KKKAFAGRRP 60 REVWTPAQEE ALAKAWVQIS ECGVVGNEQK SDGFWKRILE HYEATLGLSS RTFHAAWDIV 120 RGHDKWTEQE CFQDIAGATS NSSKRKSGEY ESASNTIPDM NEDPTPPLES RKMKKKQAAS 180 SSSISSVADE INAYIQKKTQ YLEEKSEMAK QLLATKLEGA KFKNTQREMK FFLEPHDHIR 240 DPAISEEVKR LLALEREEAD RAVFESFYGS RSAVSVSESD LAWRISAYVS EPVRSEVRVA 300 DADTVRVRVS DEVMVKGVVK GLNQCAEEDT VPEVHEITHR VFLDVDIDKQ RLGRIVIGLY 360 GEVVPTTVEN FRALCTGELG KGRSGKPLHY KGVHFHRIIP GFMIQGEDIA YGNGKGNESI 420 YGRVFRDENF KIRHSHAGLY RQCFETRVYN QLGRVTGSTV GFKMSGMLLP SKAMATAGMV 480 AMVNSGPFAG EPLSPREIPI VAGEPSTPQA IHIGQDTYVE GYYTPPEHQV GTFQPTPNGT 540 KFWIPKTNNK LKEGDVFDTI ELALTAYKNY AREGGFEVRR GGQKNSNDKK EDPSLKYFYC 600 VRQGFKPNRK PEDSQTDKTQ KTNPLGATKV IKRRKRASCR CGCTAQLRLK KRPDGKYFVT 660 KLIEKHNHSL VYEDDIKYLR AARRLTFSKQ QLINKLSNVN IGPVKSFKVM KEMYGGFEYI 720 GATYVECKNY RRGLNDFIGG RDAQMVVDKL LSREEFFTDF SVKYKLDEKT KELVGLFWAD 780 EQAKRNYEDF GDVIGGRDAQ MVVDKLLSRE EFLTDFSVKY KLDEKTKALV GLFWADEQAK 840 RNYEAFGDVV SFDATFRSNR YNMVLVPFIG IDNHNRCIIF AAALLATESA IRYTWLLKKF 900 KKVFVKVPKV VVTDQDPAMK IAIEEMLPDT RHRLCMWHIM QKLTTKVGAA LCSNTDFKRR 960 LCDIVWTDMI EPDVFDEQWH TIIADFDLGE HKWLHDMFEM RSKWIPAYFR NEPMSGLMRT 1020 TSRSESENHF FGQLTNPHLS LIEFLSHFDT AMDSQRYKYG KNTHDSRYKT PDLKTHLQVE 1080 REAAELYTHT LFYDVQDEIW SSLYHCCSLS VQEDDTSYTY VIRDTEADYK INEDDTSYTY 1140 VIRDTEADYK INGVSIEVKY KVKFVPSDCS VYCSCLKYEC YGLLCRHIFY VLRLSKVYHF 1200 PRKYLLRRWS KNALPNKSVR RQIDVASSSN PVEFVNGVIR EIYVSVEDSV TRLVTDIQKL 1260 DIYKDDVAAL LEQVKLDIPN APEMNKNELY AAALGVKEPV EVNIFAPECR NKGSVSLKRH 1320 QTQAEIAMIQ SNKPPRHCSY CDTYGYHDSR NCPKKKADLD AQMSDTSDVQ E

Sequence ? help Back to Top

Protein Sequence Length: 1371 aa Download sequence

MNPQHYNITT TSEFSPFENI DEDVEYVPET QPLPNEEDED EEVQEVDPRG KKKAFAGRRP  60
REVWTPAQEE ALAKAWVQIS ECGVVGNEQK SDGFWKRILE HYEATLGLSS RTFHAAWDIV  120
RGHDKWTEQE CFQDIAGATS NSSKRKSGEY ESASNTIPDM NEDPTPPLES RKMKKKQAAS  180
SSSISSVADE INAYIQKKTQ YLEEKSEMAK QLLATKLEGA KFKNTQREMK FFLEPHDHIR  240
DPAISEEVKR LLALEREEAD RAVFESFYGS RSAVSVSESD LAWRISAYVS EPVRSEVRVA  300
DADTVRVRVS DEVMVKGVVK GLNQCAEEDT VPEVHEITHR VFLDVDIDKQ RLGRIVIGLY  360
GEVVPTTVEN FRALCTGELG KGRSGKPLHY KGVHFHRIIP GFMIQGEDIA YGNGKGNESI  420
YGRVFRDENF KIRHSHAGLY RQCFETRVYN QLGRVTGSTV GFKMSGMLLP SKAMATAGMV  480
AMVNSGPFAG EPLSPREIPI VAGEPSTPQA IHIGQDTYVE GYYTPPEHQV GTFQPTPNGT  540
KFWIPKTNNK LKEGDVFDTI ELALTAYKNY AREGGFEVRR GGQKNSNDKK EDPSLKYFYC  600
VRQGFKPNRK PEDSQTDKTQ KTNPLGATKV IKRRKRASCR CGCTAQLRLK KRPDGKYFVT  660
KLIEKHNHSL VYEDDIKYLR AARRLTFSKQ QLINKLSNVN IGPVKSFKVM KEMYGGFEYI  720
GATYVECKNY RRGLNDFIGG RDAQMVVDKL LSREEFFTDF SVKYKLDEKT KELVGLFWAD  780
EQAKRNYEDF GDVIGGRDAQ MVVDKLLSRE EFLTDFSVKY KLDEKTKALV GLFWADEQAK  840
RNYEAFGDVV SFDATFRSNR YNMVLVPFIG IDNHNRCIIF AAALLATESA IRYTWLLKKF  900
KKVFVKVPKV VVTDQDPAMK IAIEEMLPDT RHRLCMWHIM QKLTTKVGAA LCSNTDFKRR  960
LCDIVWTDMI EPDVFDEQWH TIIADFDLGE HKWLHDMFEM RSKWIPAYFR NEPMSGLMRT  1020
TSRSESENHF FGQLTNPHLS LIEFLSHFDT AMDSQRYKYG KNTHDSRYKT PDLKTHLQVE  1080
REAAELYTHT LFYDVQDEIW SSLYHCCSLS VQEDDTSYTY VIRDTEADYK INEDDTSYTY  1140
VIRDTEADYK INGVSIEVKY KVKFVPSDCS VYCSCLKYEC YGLLCRHIFY VLRLSKVYHF  1200
PRKYLLRRWS KNALPNKSVR RQIDVASSSN PVEFVNGVIR EIYVSVEDSV TRLVTDIQKL  1260
DIYKDDVAAL LEQVKLDIPN APEMNKNELY AAALGVKEPV EVNIFAPECR NKGSVSLKRH  1320
QTQAEIAMIQ SNKPPRHCSY CDTYGYHDSR NCPKKKADLD AQMSDTSDVQ E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-57	FAR1 family protein