PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003398.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family C2H2
Protein Properties Length: 215aa    MW: 24613.7 Da    PI: 6.8681
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003398.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003181103123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++C k F ++  L  H++ H
  Cse_sc003398.1_g050.1  81 FECQYCFKEFVNSQALGGHQNAH 103
                            89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MGKNVSDLLS STCEEADVSD QQSAQTCVEK TLKLFGFELH PRPDENTLKA NILSSGEGDE  60
SINSSLTPME KNNLPIEMKK FECQYCFKEF VNSQALGGHQ NAHKKERLKK KRLQLQARRA  120
RINYYLQPYT HNKHGINFDF HGYYGPELES NISFSQYDDD LLSFRDPCNF TLTHVDSSRE  180
KYMPIAMKPS SRPVDIKQNY TGLDLQLSLS SNSIM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.16e-13C2H2 family protein