PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003413.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 527aa MW: 58574.3 Da PI: 8.7572

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003413.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.3	1.4e-16	125	174	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Cse_sc003413.1_g020.1 125 SQYRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAHAAARAYDRAAIKFRG 174 78*****************......44**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MLDLNLNFLN QTEPSESNNN TSTSNAADSN DDSNDSLTCF NFDILKVGDT SCQTATQPEL 60 VTHHLFPTSH EKGLMPQSAN SLLLCPDTNE LQEMRLVQVV QPTKPVVQVN QAGKKSRRGP 120 RSRSSQYRGV TFYRRTGRWE SHIWDSGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN 180 FSLTDYDEDM KQQMKNFSKE EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG 240 KKYQLKTRMM TFRHVDYNAC IAGMYILDYS TVKQKQQGPN DHELHIDSFI LKLFFTQKIS 300 LCNLNWVLSN ILNFLENRAY DKAAIECNGR EAVTNFEAST YEGNTQPASH QGNDHNLNLS 360 LGISTSSPGV GSSRNGNIEP SHLNYMQDTR RLQHLQNPVS TTAGITPFKG LPFTSGHSPS 420 WNGVYNTFVP NYEGNMTSAG TITGPSQGPP NWGWQLHGHN HMSVALAAAS SGFSAPVATS 480 ILPSGSHHPR NTISVAALNS HYPPSMAATS SSQYYYQIRP PPPPPPP

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MLDLNLNFLN QTEPSESNNN TSTSNAADSN DDSNDSLTCF NFDILKVGDT SCQTATQPEL  60
VTHHLFPTSH EKGLMPQSAN SLLLCPDTNE LQEMRLVQVV QPTKPVVQVN QAGKKSRRGP  120
RSRSSQYRGV TFYRRTGRWE SHIWDSGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN  180
FSLTDYDEDM KQQMKNFSKE EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG  240
KKYQLKTRMM TFRHVDYNAC IAGMYILDYS TVKQKQQGPN DHELHIDSFI LKLFFTQKIS  300
LCNLNWVLSN ILNFLENRAY DKAAIECNGR EAVTNFEAST YEGNTQPASH QGNDHNLNLS  360
LGISTSSPGV GSSRNGNIEP SHLNYMQDTR RLQHLQNPVS TTAGITPFKG LPFTSGHSPS  420
WNGVYNTFVP NYEGNMTSAG TITGPSQGPP NWGWQLHGHN HMSVALAAAS SGFSAPVATS  480
ILPSGSHHPR NTISVAALNS HYPPSMAATS SSQYYYQIRP PPPPPPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.2	3e-64	AP2 family protein