PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003447.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 274aa    MW: 31548.5 Da    PI: 8.2103
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003447.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-143279148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT +Ed ll+++++ +G g+W++ a+  g++R +k+c +rw++yl
  Cse_sc003447.1_g020.1 32 RGPWTLDEDNLLIQYITCHGEGHWNSLAKSSGLKRKGKSCSLRWLNYL 79
                           89******************************99************97 PP
2Myb_DNA-binding37.84.3e-1286128246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g+ +++E++l+++ + ++G++ W +Ia+ +  gRt++++k++w++
  Cse_sc003447.1_g020.1  86 GNLSPQEQLLILEIHSKWGNR-WPKIAQQLL-GRTDNEIKNYWRT 128
                            6779*****************.********9.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MAIKCQIGHL TKSNQNKISS SCHEQEVAQL RRGPWTLDED NLLIQYITCH GEGHWNSLAK  60
SSGLKRKGKS CSLRWLNYLK PDVKHGNLSP QEQLLILEIH SKWGNRWPKI AQQLLGRTDN  120
EIKNYWRTKV QKQARYLKID SNSKKFVEAL KQFWLPRLLE KVEQSSPSSS STSTTTMDAY  180
QKNLSHQALS NETLMENTYS SSSICSLNST KIVLPYLPES SIQSNGYFVD NNNFDSMSFN  240
HLNMQESRYS DMSALDFQLA EVDWMNNELV DDTF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16470LKRKGKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-74MYB family protein