PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003530.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 510aa MW: 56290.5 Da PI: 8.927

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003530.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cse_sc003530.1_g020.1 107 FVCEICNKGFQRDQNLQLHRRGH 129 89*******************88 PP
2	zf-C2H2	11.8	0.00072	184	206	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Cse_sc003530.1_g020.1 184 WKCEKCSKKYAVQSDWKAHSKIC 206 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MYMETLQDKA LISLCVSYVC ERNKKIFSFQ VAIMFLKDST KMMSNDGFSS PPSSLTSFIQ 60 DDPLTNPNPN PNSSVSGKRK RNQAGNPDPE AEVIALSPTS LMATNRFVCE ICNKGFQRDQ 120 NLQLHRRGHN LPWKLKQRNK NEVIKKKVYI CPEKTCVHHD PSRALGDLTG VKKHFSRKHG 180 EKKWKCEKCS KKYAVQSDWK AHSKICGTRE YKCDCGTLFS RKDSFITHRA FCDALMEENS 240 RMTTLPMVPN MANIGFRNDL MMMNGASGSG GDGQFQGVFG GGLEGNLDVN GAKPRLPMWL 300 DHNANNSQLE NPNNPTFLGA SSSNYNNNGG MLPPEMVNWL SRYNGLPQGL SLKEEDENQK 360 EMQMNSMFNT FGGSTSQNNL MCSTLPPQQP PAVANMSATA LLQKAAQMGS TRSTNSGGND 420 SGFGLMSTTI SNLASPRNGD RMMMMAAAAT DGSTQGKGSG NNEFGDGEIT RDFLGVARND 480 RGVSFTLQQE LSKFASSTMG FNQQFNRNHE

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MYMETLQDKA LISLCVSYVC ERNKKIFSFQ VAIMFLKDST KMMSNDGFSS PPSSLTSFIQ  60
DDPLTNPNPN PNSSVSGKRK RNQAGNPDPE AEVIALSPTS LMATNRFVCE ICNKGFQRDQ  120
NLQLHRRGHN LPWKLKQRNK NEVIKKKVYI CPEKTCVHHD PSRALGDLTG VKKHFSRKHG  180
EKKWKCEKCS KKYAVQSDWK AHSKICGTRE YKCDCGTLFS RKDSFITHRA FCDALMEENS  240
RMTTLPMVPN MANIGFRNDL MMMNGASGSG GDGQFQGVFG GGLEGNLDVN GAKPRLPMWL  300
DHNANNSQLE NPNNPTFLGA SSSNYNNNGG MLPPEMVNWL SRYNGLPQGL SLKEEDENQK  360
EMQMNSMFNT FGGSTSQNNL MCSTLPPQQP PAVANMSATA LLQKAAQMGS TRSTNSGGND  420
SGFGLMSTTI SNLASPRNGD RMMMMAAAAT DGSTQGKGSG NNEFGDGEIT RDFLGVARND  480
RGVSFTLQQE LSKFASSTMG FNQQFNRNHE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-101	C2H2 family protein