PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003546.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 220aa MW: 24560.9 Da PI: 8.7029

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003546.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.3e-16	16	61	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd +l+++v+ G ++W+ I + + gR++k+c++rw + Cse_sc003546.1_g070.1 16 KGSWTPEEDAKLIQLVETQGARNWSVIGSSIL-GRSGKSCRLRWCNQ 61 799**************************9.*********985 PP
2	Myb_DNA-binding	50.6	4.3e-16	70	112	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ede++++a+ +G++ W+ I++ ++ gRt++ +k++w++ Cse_sc003546.1_g070.1 70 PFTPHEDEIILRAHVIHGNK-WSIISKLLP-GRTDNTIKNHWNST 112 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MTSSPSNDNV NLLKKKGSWT PEEDAKLIQL VETQGARNWS VIGSSILGRS GKSCRLRWCN 60 QLCPNVQHRP FTPHEDEIIL RAHVIHGNKW SIISKLLPGR TDNTIKNHWN STLRRRGLTL 120 ARSSSESEST QSDNDEGLGL KNKKRRCVSV SDVSSCDGMT VLTLLPPGDD GEKKKDGDDE 180 DACLVQVMRK MIAKEVRSYI DELRAKDCLS FGPVLHPVTQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	146	LKNKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	5e-46	MYB family protein