PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003567.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 490aa MW: 56538.9 Da PI: 5.2792

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003567.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.6	2.2e-08	91	113	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++++ G+C+ Gd C+F Hgp Cse_sc003567.1_g030.1 91 VPCYYYLK-GFCSKGDACSFLHGP 113 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MEEEELIIKG FTDCVYFLAS PLTCKKGIEC EYRHCEVARL NPRDCWYWLG GCCYNPECAF 60 RHPPLDGLKE AYHEPPNLNN GPALPVDKTN VPCYYYLKGF CSKGDACSFL HGPAASSVTF 120 TNEVPCEKKL SVATNTESKP VKSHPDPPES VQIKHTHPVE KRTQDSHQLA SEVPEKREPV 180 QSKENVEDVV FVQSGENVED EEFVESEENV KHEDFVESEE NVKHEEFVQS ESDDFDDQSS 240 DGYVEREGYM KSPPGFDVLV EGGSERLDYE KDADYYTVYD EEHRVVDVHY ADYNPAYTKS 300 ENALKEQRYD VYDRFDEMSE QPRESIFYRL SFQKRNLQPE PFLKRRRGSD LREFLKGKVV 360 DGSFFKGYES NHQIKGNPRK HESCVGIDFD YRARISEAVY MNKHRQPIRD KRLMKPLVLS 420 SAVSRSRKPA QYSNRRSSDE SGVFTGPKSL DQIKEEKKKA LQGSFKVTES DDFQGPRPLS 480 EILKNKRKLV

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MEEEELIIKG FTDCVYFLAS PLTCKKGIEC EYRHCEVARL NPRDCWYWLG GCCYNPECAF  60
RHPPLDGLKE AYHEPPNLNN GPALPVDKTN VPCYYYLKGF CSKGDACSFL HGPAASSVTF  120
TNEVPCEKKL SVATNTESKP VKSHPDPPES VQIKHTHPVE KRTQDSHQLA SEVPEKREPV  180
QSKENVEDVV FVQSGENVED EEFVESEENV KHEDFVESEE NVKHEEFVQS ESDDFDDQSS  240
DGYVEREGYM KSPPGFDVLV EGGSERLDYE KDADYYTVYD EEHRVVDVHY ADYNPAYTKS  300
ENALKEQRYD VYDRFDEMSE QPRESIFYRL SFQKRNLQPE PFLKRRRGSD LREFLKGKVV  360
DGSFFKGYES NHQIKGNPRK HESCVGIDFD YRARISEAVY MNKHRQPIRD KRLMKPLVLS  420
SAVSRSRKPA QYSNRRSSDE SGVFTGPKSL DQIKEEKKKA LQGSFKVTES DDFQGPRPLS  480
EILKNKRKLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	8e-08	C3H family protein