PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003717.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LSD

Protein Properties

Length: 179aa MW: 18970.1 Da PI: 8.4376

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003717.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.3	5.2e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC++V Cse_sc003717.1_g010.1 7 CNGCRSILLYPRGASNVCCALCNAV 31 ************************9 PP
2	zf-LSD1	49.6	6.2e-16	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV Cse_sc003717.1_g010.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	47.6	2.7e-15	84	107	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ Cse_sc003717.1_g010.1 84 CGNCRTMLMYPYGAPSVKCAVCQY 107 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence
MQSQIVCNGC RSILLYPRGA SNVCCALCNA VTSVPPPGME MDQLICGGCR TLLMYTRGAT 60 SVRCSCCHTV NLSPVHNQVA QVNCGNCRTM LMYPYGAPSV KCAVCQYITN VNQMSNGRVP 120 IPMRPNGTAT SGPMPPVSTA TPTSHNQTVV VENPMSVDES GKLVSNVVVG VTTEKKAIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	5e-75	LSD family protein