PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003732.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 197aa MW: 23400.8 Da PI: 7.1008

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003732.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	6.1e-16	6	49	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+W++eEde l+++++++G + W++I + ++ gR++ +c +rw+++ Cse_sc003732.1_g040.1 6 GSWSPEEDEMLLNLFRKHGLD-WSLIGKSIP-GRSDQSCMLRWFSL 49 79***************99.*****.*********976 PP
2	Myb_DNA-binding	45.8	1.4e-14	52	93	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eEde l+++++++G + W++I + ++ gR++ +c +rw++ Cse_sc003732.1_g040.1 52 SFTPEEDEMLLNLFRKHGLD-WSLIGKSIP-GRSDQSCMLRWFS 93 79**************99.*****.*********86 PP
3	Myb_DNA-binding	30.8	6.6e-10	98	139	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +T++Ed l +v+++ + W++I++ ++ +++k c +rw+++ Cse_sc003732.1_g040.1 98 FTPQEDRMLEYLVEKHSHN-WSLISKSIP-CKSDKTCELRWFSL 139 8**************88.*****.99*******976 PP
4	Myb_DNA-binding	45	2.5e-14	142	181	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++T+eEde l +++k +G + W++I++ ++ gR++k c++rw Cse_sc003732.1_g040.1 142 SFTPEEDEMLQNLIKNHGRN-WSLISNSIP-GRSAKTCRLRW 181 79**************66.*****.********* PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MGQIEGSWSP EEDEMLLNLF RKHGLDWSLI GKSIPGRSDQ SCMLRWFSLQ KSFTPEEDEM 60 LLNLFRKHGL DWSLIGKSIP GRSDQSCMLR WFSIFWLFTP QEDRMLEYLV EKHSHNWSLI 120 SKSIPCKSDK TCELRWFSLQ KSFTPEEDEM LQNLIKNHGR NWSLISNSIP GRSAKTCRLR 180 WEIVWKPLQI REDIENH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	1e-19	MYB family protein