PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003765.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 291aa    MW: 32780.4 Da    PI: 7.5006
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003765.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.22.8e-25957149
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           krie+ks rqvtfskRr+g++KKA  LSvLCd+++avi+fs  gklye 
  Cse_sc003765.1_g040.1  9 KRIEDKSSRQVTFSKRRTGLMKKARHLSVLCDVDIAVIVFSALGKLYES 57
                           79*********************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MGRKKLEMKR IEDKSSRQVT FSKRRTGLMK KARHLSVLCD VDIAVIVFSA LGKLYESCSG  60
SSSNSVEHML SRYERSITEE GERTNNGAGG QLVSNSFSRV GHFTHDTNGN LYSALTTCVV  120
FKKSWPQEVL SQCTKFRTCK ELLQTVDRLV EENNSEGLSV TDMTELELEL DAALVQTRLR  180
KVIVRCYLFN LVSQAVIVLY VMNHLSSTNC TQLMMEYMSS LQEEEKKLTA DKEELEKQQV  240
ASAKQLQNDD GGGGLNNLAT NQTNSPQHLD KASHVYLLIN MKIEMLGHAQ W
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.18e-27MIKC_MADS family protein