PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003765.1_g080.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 23445.4 Da    PI: 4.884
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003765.1_g080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.51.1e-25957149
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           kri++k  rqvtfskRr+g++KKA  LSvLCd+++av++fss+gklye 
  Cse_sc003765.1_g080.1  9 KRIDDKNSRQVTFSKRRTGLMKKARQLSVLCDVDIAVVVFSSQGKLYES 57
                           79*********************************************95 PP
2K-box42.43.1e-15981732399
                  K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                            + +  +e Lq+   +l+ e+ e+Ls++++ qLeq+L+ +l + R +K++l++e +++lq+kek+l+e++++L+k+++
  Cse_sc003765.1_g080.1  98 RFRTCNELLQTV-DRLVEENNEQLSVNDMTQLEQELDAALMQTRLRKTQLMMEYVSTLQEKEKMLSEDKEELQKQVA 173
                            667778888887.668889999****************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MGRRKLEIKR IDDKNSRQVT FSKRRTGLMK KARQLSVLCD VDIAVVVFSS QGKLYESSSG  60
GSSVESILSR YEKSCAETGE GSNRGACTDL EFLLQSTRFR TCNELLQTVD RLVEENNEQL  120
SVNDMTQLEQ ELDAALMQTR LRKTQLMMEY VSTLQEKEKM LSEDKEELQK QVAAAKQNDG  180
DDGGGGLNNL ANNYENSLQP LVTLSLFNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.13e-38MIKC_MADS family protein