PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003783.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

HD-ZIP

Protein Properties

Length: 170aa MW: 19655.4 Da PI: 9.7437

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003783.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.8	1.2e-10	20	52	24	56
S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +++ + k++gL+ rqV +WFqNrRa++k Cse_sc003783.1_g030.1 20 KVEPDRKIQQPKEIGLQSRQVATWFQNRRARWK 52 55556666666899******************9 PP
2	HD-ZIP_I/II	68.4	1.5e-22	17	66	20	69
HD-ZIP_I/II 20 eeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkra 69 ++k+ep+rK + +e+glq rqva WFqnrRAR+ktkqlEkdy+ L++ Cse_sc003783.1_g030.1 17 LDNKVEPDRKIQQPKEIGLQSRQVATWFQNRRARWKTKQLEKDYNDLQEI 66 578*******************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence
MQLQGPTVSS RPYFMSLDNK VEPDRKIQQP KEIGLQSRQV ATWFQNRRAR WKTKQLEKDY 60 NDLQEILLIL WLQLTIIQTF TWGMVSGSIL DENQVRSIVD KITQEGELLK EENQQEEKVF 120 DQGFGNVGSL VAQLFNEGGR KVVASNRRLS YGSAVRSEDV KTKPEKQLIK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	47	55	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	2e-18	HD-ZIP family protein