PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003784.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 483aa MW: 51733.8 Da PI: 8.2196

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003784.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cse_sc003784.1_g030.1 57 FVCEICNKGFQRDQNLQLHRRGH 79 89*******************88 PP
2	zf-C2H2	16	3.4e-05	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Cse_sc003784.1_g030.1 133 WKCERCTKKYAVQSDWKAHMKTC 155 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MVDFEDSSTT MAVSVSTTEP NPDTQPVKKK RNLPGMPDPE AEVIALSPTA LLATNRFVCE 60 ICNKGFQRDQ NLQLHRRGHN LPWKLKQRDG KEIRKRVYVC PEVSCIHHDP SRALGDLTGI 120 KKHFSRKHGE KKWKCERCTK KYAVQSDWKA HMKTCGTKEY RCDCGTLFSR RDSFITHRAF 180 CDALAQESVR SQPQVETNVV VPQTNSPPPQ PLTPSTGVLS PVQSVHSSDV PEKALAISQH 240 QNVTVADTAD TTTVVTTVSG GGSTSSGNNA ATNNTGVFAS IFASSSVIQS SQSSPASYSN 300 MICGVTGADL NTAIEPMSLS LSSSLYRSSN VAPSLFPQQD QTLQPRYVQT QQPALSATAL 360 LQKAAQMGSA SSNTSFLHAL GLAPTSTPTT TDHYQEANIG HWSSMQSKQE RNDNSGIGLM 420 GPPATTTLDF LGLGTGGSSG GYSAFLSSIG GNSLNVAAAA AARVPFSVQN KDWDDSGDTK 480 PPI

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MVDFEDSSTT MAVSVSTTEP NPDTQPVKKK RNLPGMPDPE AEVIALSPTA LLATNRFVCE  60
ICNKGFQRDQ NLQLHRRGHN LPWKLKQRDG KEIRKRVYVC PEVSCIHHDP SRALGDLTGI  120
KKHFSRKHGE KKWKCERCTK KYAVQSDWKA HMKTCGTKEY RCDCGTLFSR RDSFITHRAF  180
CDALAQESVR SQPQVETNVV VPQTNSPPPQ PLTPSTGVLS PVQSVHSSDV PEKALAISQH  240
QNVTVADTAD TTTVVTTVSG GGSTSSGNNA ATNNTGVFAS IFASSSVIQS SQSSPASYSN  300
MICGVTGADL NTAIEPMSLS LSSSLYRSSN VAPSLFPQQD QTLQPRYVQT QQPALSATAL  360
LQKAAQMGSA SSNTSFLHAL GLAPTSTPTT TDHYQEANIG HWSSMQSKQE RNDNSGIGLM  420
GPPATTTLDF LGLGTGGSSG GYSAFLSSIG GNSLNVAAAA AARVPFSVQN KDWDDSGDTK  480
PPI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-111	C2H2 family protein