PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003816.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 243aa    MW: 26958.7 Da    PI: 9.3307
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003816.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.7e-193884148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd +l+++v+ +G ++W+ I + ++ gR+ k+c++rw ++l
  Cse_sc003816.1_g040.1 38 KGSWTPEEDAKLIQLVETHGARNWSVIGSSIP-GRSNKSCRLRWCNHL 84
                           799*****************************.*************96 PP
2Myb_DNA-binding48.32.3e-1592134347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++T+ Ed+ +++a+  +G++ W+ I++ ++ gRt++ +k++w++ 
  Cse_sc003816.1_g040.1  92 PFTPHEDDVILRAHVIHGNK-WSVISKLFP-GRTDNAIKNHWNST 134
                            89******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
SSTGMGDLPG SLHMRPQKQI REPTGKADNI VVKKGGKKGS WTPEEDAKLI QLVETHGARN  60
WSVIGSSIPG RSNKSCRLRW CNHLSPNVQH RPFTPHEDDV ILRAHVIHGN KWSVISKLFP  120
GRTDNAIKNH WNSTLRRRGL TLTRSSESKL TQSDDNDEGL KNKMRCVSDV SSCDGMTVLS  180
LLPPGDGEKK KGDDEVDIDD TCLVVVMRKM IAKEVRTYID ELMAKDGLSL GPVLHPVPNR  240
VSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-43MYB family protein