PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003886.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

SBP

Protein Properties

Length: 792aa MW: 87848.1 Da PI: 6.4093

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003886.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	114.9	4.4e-36	150	226	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe+d+se+k yh+rh+vC +++a++v+++g +r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k Cse_sc003886.1_g020.1 150 RCQVPGCEVDISELKGYHKRHRVCLRCANAASVVLDGCDKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKP 226 6***********************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 792 aa Download sequence
MHNTQPSAQS PPGQPPAFNM DLIDDPSSSI WDWSQFLDFN VDDHLPLPSE HSPIIQLDNP 60 QLEHLEPVPE PVETVSEQLD TVPVNLRVRK RDPRMACSNF LAGRIPCACP ELDAQLAAEE 120 AEAKAPGKKK TRTGGGSGSG SGSGRVGVGR CQVPGCEVDI SELKGYHKRH RVCLRCANAA 180 SVVLDGCDKR YCQQCGKFHV LSDFDEGKRS CRRKLERHNN RRRRKPSDSK GSGVNSADYD 240 DGYDEAGKGA NSISSEVAGD KSLLAGEGPN NLPSSTHAQT IHNDSVPSVA VSGETQTDEE 300 KEKGTQSPSY GDDKSAFSSM CTTGRISFKL YDWNPAEFPR RLRHQIFQWL ASMPVELEGY 360 IRPGCTILTI FIAMPRFMWL KQLDEDPVVC IHDFLASPKN LLSGRDTFFV SLNNMIFSVM 420 KGGRSVMKIK AGEKAPKLHY VQPTFFEAGK PIEFLACGSN LLQPRLRFLV SFAGKYMTNN 480 VRVSSSHNQS GASTTNLDRQ FLNICVPRTE LDAFGPGFIE VENESGLSNF VPILVADQEV 540 CSEIKIMQMK YYTLHSRNSE STSTSMSCEV AVNKFSELLV DIAWLLKQPF VEDMECAMTS 600 SQLPRFNFVL SFLIEYESTV VLKRVLNCVK MRIIENGGVI EADSVLQGTV NRATEVLKQR 660 LEKKLNLDLC PRDVFQEDDE SCRDQVVPLV SAVNQDMVLA DSMWIPTAGD NSERVALLTA 720 DCVMSVAPYK EPPKKPLNQL FTYKTSRLFT PRPLIVTVAL VTVCFGVCAV VFHPQKATSI 780 AITIRRCLFD DN

Sequence ? help Back to Top

Protein Sequence Length: 792 aa Download sequence

MHNTQPSAQS PPGQPPAFNM DLIDDPSSSI WDWSQFLDFN VDDHLPLPSE HSPIIQLDNP  60
QLEHLEPVPE PVETVSEQLD TVPVNLRVRK RDPRMACSNF LAGRIPCACP ELDAQLAAEE  120
AEAKAPGKKK TRTGGGSGSG SGSGRVGVGR CQVPGCEVDI SELKGYHKRH RVCLRCANAA  180
SVVLDGCDKR YCQQCGKFHV LSDFDEGKRS CRRKLERHNN RRRRKPSDSK GSGVNSADYD  240
DGYDEAGKGA NSISSEVAGD KSLLAGEGPN NLPSSTHAQT IHNDSVPSVA VSGETQTDEE  300
KEKGTQSPSY GDDKSAFSSM CTTGRISFKL YDWNPAEFPR RLRHQIFQWL ASMPVELEGY  360
IRPGCTILTI FIAMPRFMWL KQLDEDPVVC IHDFLASPKN LLSGRDTFFV SLNNMIFSVM  420
KGGRSVMKIK AGEKAPKLHY VQPTFFEAGK PIEFLACGSN LLQPRLRFLV SFAGKYMTNN  480
VRVSSSHNQS GASTTNLDRQ FLNICVPRTE LDAFGPGFIE VENESGLSNF VPILVADQEV  540
CSEIKIMQMK YYTLHSRNSE STSTSMSCEV AVNKFSELLV DIAWLLKQPF VEDMECAMTS  600
SQLPRFNFVL SFLIEYESTV VLKRVLNCVK MRIIENGGVI EADSVLQGTV NRATEVLKQR  660
LEKKLNLDLC PRDVFQEDDE SCRDQVVPLV SAVNQDMVLA DSMWIPTAGD NSERVALLTA  720
DCVMSVAPYK EPPKKPLNQL FTYKTSRLFT PRPLIVTVAL VTVCFGVCAV VFHPQKATSI  780
AITIRRCLFD DN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	224	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	1e-175	SBP family protein