PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003903.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family LBD
Protein Properties Length: 227aa    MW: 24940.3 Da    PI: 8.7117
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003903.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601331.2e-41421411100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdPvyG++g i++lq+q++
  Cse_sc003903.1_g030.1  42 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANIRLRDPVYGCMGAISALQHQVQ 129
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            +l+ael+++++e
  Cse_sc003903.1_g030.1 130 SLQAELNAVRAE 141
                            ********9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MSRERERFDE IGKKIKRDID ASFQLGRRHM LGLPGTLNTI TPCAACKLLR RRCAQECPFS  60
PYFSPHEPQK FASVHKVFGA SNVSKLLMEV PENQRADAAN SLVYEANIRL RDPVYGCMGA  120
ISALQHQVQS LQAELNAVRA EILRYKYSEP QSDHSSIPST HHLPLFSTGA VPVTTQALPP  180
PPSTPLSPPP PPPPPPPRAS SSSSMYTPPS ATTDYSTITN DNVSYFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.15e-82LBD family protein