PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003903.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 272aa MW: 31126.1 Da PI: 7.8465

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003903.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	9.1e-07	116	135	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C k+F+r+ nL+ H+ Cse_sc003903.1_g040.1 116 FSCHICRKTFNRHNNLQMHM 135 89*****************9 PP
2	zf-C2H2	17.5	1.1e-05	200	222	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +CgksF k + ++H +++ Cse_sc003903.1_g040.1 200 FSCRKCGKSFAVKGDWRTHEKNC 222 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MDFFASSSKP NIPLSEPFDF FKTKDEESFK TIPFFSFLSL EPCKLEENSN TCNKVEDDDD 60 VTVALHLGLP NQNDNTIAVD DNSYSDNNNI MVANMPANVE YWIPNRSQIL AGFTHFSCHI 120 CRKTFNRHNN LQMHMWGHGS EYRKGAESLR GTQPRVMIGV PCYCCEEECK NNINHPRSKP 180 LKDFRTLQTH YKRKHGTKQF SCRKCGKSFA VKGDWRTHEK NCGKRWLCVC GSDFKHKRSL 240 KDHIMSFGAG HAPAQPSFQT VELGEATAND ME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	3e-99	C2H2 family protein