PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003942.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 241aa    MW: 27310.8 Da    PI: 4.895
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003942.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.82.8e-131156348
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                           i ++ +r+ tf  R + + KKA+ELS+LC+ ++ +ii s++g++ +
  Cse_sc003942.1_g010.1 11 IASDKKRELTFQGRVKSMKKKAYELSTLCGLDIGMIICSPSGQIET 56
                           88999*************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MVGVRRRMEL IASDKKRELT FQGRVKSMKK KAYELSTLCG LDIGMIICSP SGQIETLSWP  60
NQDDDGKTLD DLIKSSRNQG DKRKKIVTRI SKGDTQNQAG EQLGEQFRPS ISCHSQLDKI  120
ERVKQRIQYL KEENQVIHQP QVADDTSVIE DYEIMDPDDL DYLLNKIIDQ PLTPIREDFG  180
TSWPLDLPSE VQQAAATFAS NNDTNCPSNI QSVMTTGGYP MSRQEMIGRA AFQEFTYNSN  240
L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-09M-type_MADS family protein