PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004019.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MIKC_MADS

Protein Properties

Length: 218aa MW: 25191.7 Da PI: 9.976

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004019.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.8	1.9e-25	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g++KKA ELS+LCdaeva+++fs++gk y +ss Cse_sc004019.1_g020.1 9 KRIENPTSRQVTFSKRRDGLIKKAIELSILCDAEVALLVFSPSGKPYHFSS 59 79*********************************************9996 PP
2	K-box	15.1	9.7e-07	83	110	11	38
K-box 11 eakaeslqqelakLkkeienLqreqRhl 38 +++e +++e++ +kk ie+L++++Rhl Cse_sc004019.1_g020.1 83 VRTTEVWKNEMDDMKKTIETLETKHRHL 110 456899*********************8 PP
3	K-box	45.9	2.4e-16	123	175	35	87
K-box 35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 +Rhl Ged+++L +keL++Le+qL +++ ++RskK++ l e+ ++l kk k + Cse_sc004019.1_g020.1 123 LRHLSGEDISTLGMKELKRLERQLRTGVDRVRSKKHKSLQEENNNLHKKIKLH 175 6**********************************************998755 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MGRGKVEVKR IENPTSRQVT FSKRRDGLIK KAIELSILCD AEVALLVFSP SGKPYHFSSH 60 DMDRTIRRYK IEKGLDKVNN HGVRTTEVWK NEMDDMKKTI ETLETKHRHL ASLNNFQYFL 120 LVLRHLSGED ISTLGMKELK RLERQLRTGV DRVRSKKHKS LQEENNNLHK KIKLHELLSE 180 AEDSSGLDSS SDHVIQRFIP DGQPHSHIDM NELAFPSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.4	5e-43	MIKC_MADS family protein