PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004096.1_g100.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 252aa MW: 28477.7 Da PI: 6.8985

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004096.1_g100.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3.1e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l ++++ +G+g +W + +++ g++R++k+c++rw++yl Cse_sc004096.1_g100.1 14 RGPWSPEEDTILRNYIQNHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	41.4	3.4e-13	71	111	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T+eEd+++ + G++ W+ Ia+++ gRt++++k++w++ Cse_sc004096.1_g100.1 71 FTEEEDDIISSLYINIGSR-WSVIASHLS-GRTDNDVKNHWNT 111 9****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MGRSPCCDKT KVKRGPWSPE EDTILRNYIQ NHGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPDIKLGG FTEEEDDIIS SLYINIGSRW SVIASHLSGR TDNDVKNHWN TKLKKRFSSL 120 QNTTTTTTTT TNNVPCINPM QFSSPVFLPK QEVQDYQITN NPILDYSMMT MDYNPTMVSN 180 SSSNSFTDSI SSFQESQGLS SNAFPLRNEY ASWCSINDDG VTGSNSDTLT EGFDFRQVLG 240 DVANFNYTTQ WF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	5e-68	MYB family protein