PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004122.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 655aa MW: 75326.1 Da PI: 9.0544

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004122.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.6	2.6e-10	126	200	3	72
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek 72 Y +YA+++GF vrks +k+ r+g ++++ +vC++eg ++ + + ++k++ +++ + tgCka+++ ++ Cse_sc004122.1_g050.1 126 YMKYASKAGFVVRKSCQKRL-RSGIVKQNYLVCNREGCPTGIHVDtldldnSDKQKISSNLHITGCKARVMFELIP 200 99**********998887.8898*********99888878899877888889999*******998865 PP

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence
MDSIPNSLVS SDRSSSITKS DNSSSDRSSS ITKNVVVSIT ESATKDIVVS DDVSAKYMEE 60 IVAYEVGDES AAIKKLNALK TPESFSTHSN FDTPGGTVYY IPKVPVDVLL AKGNVFNSVD 120 ECISAYMKYA SKAGFVVRKS CQKRLRSGIV KQNYLVCNRE GCPTGIHVDT LDLDNSDKQK 180 ISSNLHITGC KARVMFELIP GSTKSKLTLF IVKAASVNIG ATRAHHLLTG LKGSYLLVHG 240 TTVDFKNFFR SVNCYIGDSD AQMLIAKMEN RQKHVPDFSF DYLVENAELS EIFWVDEVSK 300 YNYKEFCDVV SFDATYRTNK YKMMFVPFTA IDNHRKCVTV AAGLLKNETA NSYIWLLKEF 360 IKAFGKAPSI VVTDQDEAMR KAIEKEFVGL KHRLCMWHIT QKLPGKICSK IYDHTDFKRK 420 FNQIVWNMYI GPNEFEYQWE KLLDEFNLHN HKWLKKMFRI RSCWIHAFFV DSPLCGLMRT 480 TSRSESENSF FSHFTNSGST LMNFMNYFET AMEKQRHIQE RLDHKSIDSV PTLRTYLKIE 540 RHASKKKAKK KEKSKKKGDD NDKNEEEEEP INLFHREDEL YKNVNVEIIP NQHILRRWTK 600 NLIPAGLRNK RNRYCEKNEI VENYANEATS IVDHYVHMLS KDQTRLAAFI EKLKL

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence

MDSIPNSLVS SDRSSSITKS DNSSSDRSSS ITKNVVVSIT ESATKDIVVS DDVSAKYMEE  60
IVAYEVGDES AAIKKLNALK TPESFSTHSN FDTPGGTVYY IPKVPVDVLL AKGNVFNSVD  120
ECISAYMKYA SKAGFVVRKS CQKRLRSGIV KQNYLVCNRE GCPTGIHVDT LDLDNSDKQK  180
ISSNLHITGC KARVMFELIP GSTKSKLTLF IVKAASVNIG ATRAHHLLTG LKGSYLLVHG  240
TTVDFKNFFR SVNCYIGDSD AQMLIAKMEN RQKHVPDFSF DYLVENAELS EIFWVDEVSK  300
YNYKEFCDVV SFDATYRTNK YKMMFVPFTA IDNHRKCVTV AAGLLKNETA NSYIWLLKEF  360
IKAFGKAPSI VVTDQDEAMR KAIEKEFVGL KHRLCMWHIT QKLPGKICSK IYDHTDFKRK  420
FNQIVWNMYI GPNEFEYQWE KLLDEFNLHN HKWLKKMFRI RSCWIHAFFV DSPLCGLMRT  480
TSRSESENSF FSHFTNSGST LMNFMNYFET AMEKQRHIQE RLDHKSIDSV PTLRTYLKIE  540
RHASKKKAKK KEKSKKKGDD NDKNEEEEEP INLFHREDEL YKNVNVEIIP NQHILRRWTK  600
NLIPAGLRNK RNRYCEKNEI VENYANEATS IVDHYVHMLS KDQTRLAAFI EKLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-50	FAR1 family protein