PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004124.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family NAC
Protein Properties Length: 275aa    MW: 31439.4 Da    PI: 8.9248
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004124.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.41.9e-42301621128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                            lppGfrF+Ptd+e+v +yL +kv + +l++ +vi+e+ +i++++PwdLp +    ++e yfFsk++ ky +g+r nr+ ++gyWkatg
  Cse_sc004124.1_g030.1  30 LPPGFRFQPTDQEIVFQYLIRKVFSCPLPT-SVIPEIvNICNFNPWDLPGE---WDQERYFFSKKEAKYGHGNRVNRKSSEGYWKATG 113
                            79***************************9.7888888***********44...57899***************************** PP

                    NAM  88 kdkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             dk++++          k+  +g+kktLvfy +++p++++t+W+mheyrl
  Cse_sc004124.1_g030.1 114 FDKHITRCcnnnpmarkKDMITGMKKTLVFY-KSKPSTTRTHWIMHEYRL 162
                            *****9986666665444444**********.688888**********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MSIEDRNHAE NPSDGNKGKL TFGRDGDIKL PPGFRFQPTD QEIVFQYLIR KVFSCPLPTS  60
VIPEIVNICN FNPWDLPGEW DQERYFFSKK EAKYGHGNRV NRKSSEGYWK ATGFDKHITR  120
CCNNNPMARK KDMITGMKKT LVFYKSKPST TRTHWIMHEY RLVHSTSSPS STTSNDKVPF  180
LVLNFYKSLI QLGNWVLCHV LLNKRSRKSV EGDNYKRSDS LDWLTNQNFM SNITVPTDCD  240
IESSSCSSSS SCGSSVVTQE VSSSRKSIDC EETKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.22e-55NAC family protein