PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004141.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARR-B
Protein Properties Length: 633aa    MW: 69356 Da    PI: 6.2417
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004141.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.71.3e-28192245155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            +pr++W+ +LH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Cse_sc004141.1_g040.1 192 RPRVVWSIDLHRKFVAAVNQL-GIEKAVPKRILDLMNVDGLTRENVASHLQKYRL 245
                            59*******************.********************************8 PP
2Myb_DNA-binding35.32.7e-11194244148
                            TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                            r  W+ +++ ++v av+qlG +   +k+I   m+  g+t++++ s++qky+
  Cse_sc004141.1_g040.1 194 RVVWSIDLHRKFVAAVNQLGIEkaVPKRILDLMNvDGLTRENVASHLQKYR 244
                            678***********************************************7 PP
3Response_reg76.11.3e-25211291109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl vdD+p+ +++l+++l++ +y +v+++ ++ +al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++++++++++
  Cse_sc004141.1_g040.1  21 VLAVDDNPTCLKVLERLLRECQY-QVTTTNQAIKALKMLRENRnrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNSDPKLV 106
                            799********************.***************999889*******************87754.558*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + +  Ga d+l+Kp+   el +
  Cse_sc004141.1_g040.1 107 MKGVTHGACDYLVKPVRLMELQN 129
                            *****************999976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    
MTVEGMVGSN EIDKFPIGMR VLAVDDNPTC LKVLERLLRE CQYQVTTTNQ AIKALKMLRE  60
NRNRFDLVIS DVHMPDMDGF KLLELVGLEM DLPVIMLSGN SDPKLVMKGV THGACDYLVK  120
PVRLMELQNI WQHVVRRKVG GKSQSKSIND NENSDQGNEG GDQNVKVNRK RKDEDEDEEN  180
GHDSDDQTTQ KRPRVVWSID LHRKFVAAVN QLGIEKAVPK RILDLMNVDG LTRENVASHL  240
QKYRLYLKRI SHQANMVVAF GGPKDASSYM RMNPLDGLVD YRTLSCSGRL PNATYASSGM  300
LGRLNSATAV SLHSLSAPPL VQTNHIQNKL QPLVSSTPLN HQNMNLFQGI PPSFDLDNQQ  360
IFNSVDESRI FTGTKVADVN TIGESQMFTG TQLTIMNFYD ESRILIGTQL MNFHFIVESR  420
IFTGLTDPVS VLGSQSALKL SSTGSESCNL LSNGTSFLDQ TSNQPLNTFS NQLPIGDNFS  480
YATINGGFGS GITTAAALPL EAHGDGLVGD IVRNVNQPIS NQNHTSGPHS KQDYSQYSQN  540
AFSTLASSAL AGGGGLSGPV SHGRINGGAW TKLRYSDDYL VDQTNKLQGG FVGGNGYGSL  600
DDNMTGMLKR EQDPTRIMDG ELGYDSYGFG SCA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-122ARR-B family protein