PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004189.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MIKC_MADS

Protein Properties

Length: 259aa MW: 29648.4 Da PI: 8.183

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004189.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.7	1.1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Cse_sc004189.1_g020.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	75.6	1.3e-25	80	179	6	100
K-box 6 gksleeakaeslqqelakLkkeienLqreqRh.....llGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 ++ ++ ++s+++e+ kLk+++e+Lq+ qR+ l GedL++L+lkeL+qLe+qL++ l++iRs +++ +l+ +++lq ke++ Cse_sc004189.1_g020.1 80 VSRSANDAEQSSYKEYMKLKAKYESLQQYQRQvscvqLFGEDLGPLNLKELEQLERQLDSTLRQIRSIRTQSMLDRLSDLQVKERMWL 167 45566777899**************999963333379********************************************* PP K-box 89 eenkaLrkklee 100 e+nkaL++klee Cse_sc004189.1_g020.1 168 EANKALQNKLEE 179 *******987 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST 60 SNMLKMLERY QNCTYSSMEV SRSANDAEQS SYKEYMKLKA KYESLQQYQR QVSCVQLFGE 120 DLGPLNLKEL EQLERQLDST LRQIRSIRTQ SMLDRLSDLQ VKERMWLEAN KALQNKLEEY 180 YAENQAGPSW AGGGGENGNN TYGQHHQQHQ EQHPEPQGFF QPLDCNSNLQ IGYNTIGSSQ 240 IAASTSGQNV NGIVPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	1e-100	MIKC_MADS family protein