PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004259.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family LBD
Protein Properties Length: 230aa    MW: 25720.9 Da    PI: 8.676
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004259.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260111.84.7e-3537132196
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            aCa+C+++r+kC+++Cvlap fpae++++f++vhk+FG+snv+kl+k+l++e+ ++a++sl++eA++r++dPv+G +g ++++  +l+
  Cse_sc004259.1_g030.1  37 ACASCRHQRKKCTEKCVLAPFFPAEKTQDFQAVHKVFGVSNVTKLVKDLSREDGKKAVDSLIWEANCRIKDPVNGPLGEFQRVCDELR 124
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelal 96 
                            + +a++++
  Cse_sc004259.1_g030.1 125 RYQANIHH 132
                            ***99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MQNNHNGSTN NTIRVLEAAP SPSPPPATAA NGGGVPACAS CRHQRKKCTE KCVLAPFFPA  60
EKTQDFQAVH KVFGVSNVTK LVKDLSREDG KKAVDSLIWE ANCRIKDPVN GPLGEFQRVC  120
DELRRYQANI HHDNIRQVHI AQNGVLYNKS SLQPRSIGSW NGDHNNVINN GTPMLEYFHS  180
NGIGGCIDNP RMFPYGSLQN IEKRKPEREQ QGSLIHPQPQ MMNDFTQNYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.18e-39LBD family protein