PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004310.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family WOX
Protein Properties Length: 242aa    MW: 27074.3 Da    PI: 9.9568
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004310.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.31.9e-21110169357
                            --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                            +R+++t+eq+ +Le l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  Cse_sc004310.1_g030.1 110 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLskygKIEGKNVFYWFQNHKARERQ 169
                            7*****************99**************************************97 PP
2Wus_type_Homeobox119.51.4e-38110171465
      Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                            tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq
  Cse_sc004310.1_g030.1 110 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLSKYGKIEGKNVFYWFQNHKARERQKQ 171
                            8***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MGLSSMKVHQ FARGGALWGD DDYSSSGLSL GVCKRLRPLN PKLTSSSSSE TCFTMNNISV  60
SNNSSSSNSH AATGAFDLRS FIRPESSPIQ LVSPEHKKDS PQVETHPGGT RWNPTQEQIG  120
ILEMLYRGGM RTPNAQQIEQ ITAQLSKYGK IEGKNVFYWF QNHKARERQK QKRNNLGLTH  180
SPRSAPSSTM INSISLKPRG EVVESPYKKC RSWSFESLEK DEEDNKTLEL FPLHPEGRSR  240
SS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.14e-72WOX family protein