PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004318.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 296aa    MW: 33918 Da    PI: 8.3373
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004318.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-1455102148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g+W+++Ed +l  ++++ G  +W+  ++  g+ R++k+c++rw +yl
  Cse_sc004318.1_g040.1  55 KGAWSEDEDNRLRAYIERNGHYNWRELPKLAGLSRCGKSCRLRWKNYL 102
                            79******************99************************97 PP
2Myb_DNA-binding55.21.6e-17108152147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg+ ++eE++++v ++++lG++ W++Ia++++ gR+++++k++w+ +
  Cse_sc004318.1_g040.1 108 RGNYSKEEEDIIVSLHNKLGNK-WSKIAEKLP-GRSDNEIKNHWHAH 152
                            899*******************.*********.***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MEPRSYLHIY SYIQSRNIKG LLVNIDIKKE IYRDRELEDN NMVMAPCFDK NGRKKGAWSE  60
DEDNRLRAYI ERNGHYNWRE LPKLAGLSRC GKSCRLRWKN YLCPDVKRGN YSKEEEDIIV  120
SLHNKLGNKW SKIAEKLPGR SDNEIKNHWH AHLKTRAQKD QRILTSKNEE NEGLQTDKTN  180
PRVSPAKNIN VKSEEKVVTE VPTKSSSQLP SISATSSSSF SGSHYATSTY VSPQSSCYIP  240
EGDFWTEPFV VDNNSIYSSD ISSSPLGLVN DFLFQTSCQE MFLNDTISLS SLVSYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.12e-55MYB family protein