PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004343.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 297aa    MW: 34124.9 Da    PI: 9.6632
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004343.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-181964147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           rg W + Ede+l ++v+++G+ +W++Ia++++ gR++k+c++rw++ 
  Cse_sc004343.1_g040.1 19 RGHWRPAEDEKLRQLVQRYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 64
                           899*****************************.***********996 PP
2Myb_DNA-binding57.23.8e-1871115147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r ++++eE+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ +
  Cse_sc004343.1_g040.1  71 RRPFSEEEEERLLAAHRVHGNK-WALISRLFP-GRTDNAVKNHWHVV 115
                            679*******************.*********.***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MDEAVAAGGS NDYARTCPRG HWRPAEDEKL RQLVQRYGPQ NWNSIAEKLQ GRSGKSCRLR  60
WFNQLDPRIN RRPFSEEEEE RLLAAHRVHG NKWALISRLF PGRTDNAVKN HWHVVMARKQ  120
REKSKICDMS TRYEDSLHCL TSFNNGVHRR RLSSDESSSS KFFLKFENEN KEKVNSWNFI  180
RPTTMLAAKR SSSMNLVGKQ QGKNSFGSLI YHDGNTQCSN SSLDHSFFCN YYGGNRVSSD  240
SQSYKTVTYA SGFRSNHNLQ SVVKMQETSK QEKEDDRAAI DHDDIPFIDF LGVGISS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-62MYB family protein