PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004418.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 759aa MW: 85562.4 Da PI: 8.6291

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004418.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.7e-05	35	57	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k F r nLk H r H Cse_sc004418.1_g020.1 35 YVCETCYKGFVREQNLKLHGRAH 57 9******************9988 PP
2	zf-C2H2	12.1	0.00061	111	133	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k + +Lk+H++ + Cse_sc004418.1_g020.1 111 HKCDTCSKAYAAEVDLKTHLKIC 133 79******************987 PP
3	zf-C2H2	14.8	8.5e-05	432	454	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k F r nL+ H r H Cse_sc004418.1_g020.1 432 YVCETCYKGFVREQNLQLHGRAH 454 9******************9988 PP
4	zf-C2H2	12.2	0.00057	508	530	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k + +Lk H++ + Cse_sc004418.1_g020.1 508 HKCDTCSKAYAAEVDLKAHLKIC 530 79******************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence
MQAQKMAPGS KSRKDPVTSQ VVAVSPDRLL DVRRYVCETC YKGFVREQNL KLHGRAHNLP 60 FTLRRNSSNE TKKVYLCPES TCIYHNPTHA IGDLGGLKKH YLRKHVTEKN HKCDTCSKAY 120 AAEVDLKTHL KICGKKKHKC SCGMKFKKYN FLSSSTLSYP PTFNMERNSD RITINQNNIT 180 LTPQISSVQT PLNSYPTISH YEPQLYDIVA NQGSLMTNHS MGSNSGQTLQ ASYFPSIQQN 240 QQDSQNKFGE GSYMQMLMGN NVSVDNFEEN DPEKNPVSYQ ITYQVPPTKG KISTSKTSKK 300 SILERLEEEV CDTKIKVLAN LKQEYPKYTP LLGQILERLL SQEVEYKLHH TEEIIAAVDE 360 LVESIDRDGL AKFLSINGDP EEEEFEATKK NMETTRDQLV EALHQKGLAL MEVASLKVVA 420 VSPDRLLDVR RYVCETCYKG FVREQNLQLH GRAHNLPFTL RRNSSNEKKK VYLCPESTCI 480 YHNPSHAIGD LAGLKKHYLR KHVTEKNHKC DTCSKAYAAE VDLKAHLKIC GKKKHKCSCG 540 MKFKKKYDLN LHMDHYCSAR RLNGATNHSS RNDMGNNSAN VTRNNNTGFM IGSTLSYPPT 600 FNMERNSDRI TINQNNITLT PQISSVQTPF NSYPTISHYE PQLYDIVANQ GSLMTNHSIG 660 SNSGQTLQAS YFPSIQQNQQ DQNKFGEGSY MQMLMGNNVS VDNFEVDNNF NGGSYYGQEG 720 SDSYIIQSVH NTSLNAMMDN GYGGGAGSFN QAYGQGYCG

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence

MQAQKMAPGS KSRKDPVTSQ VVAVSPDRLL DVRRYVCETC YKGFVREQNL KLHGRAHNLP  60
FTLRRNSSNE TKKVYLCPES TCIYHNPTHA IGDLGGLKKH YLRKHVTEKN HKCDTCSKAY  120
AAEVDLKTHL KICGKKKHKC SCGMKFKKYN FLSSSTLSYP PTFNMERNSD RITINQNNIT  180
LTPQISSVQT PLNSYPTISH YEPQLYDIVA NQGSLMTNHS MGSNSGQTLQ ASYFPSIQQN  240
QQDSQNKFGE GSYMQMLMGN NVSVDNFEEN DPEKNPVSYQ ITYQVPPTKG KISTSKTSKK  300
SILERLEEEV CDTKIKVLAN LKQEYPKYTP LLGQILERLL SQEVEYKLHH TEEIIAAVDE  360
LVESIDRDGL AKFLSINGDP EEEEFEATKK NMETTRDQLV EALHQKGLAL MEVASLKVVA  420
VSPDRLLDVR RYVCETCYKG FVREQNLQLH GRAHNLPFTL RRNSSNEKKK VYLCPESTCI  480
YHNPSHAIGD LAGLKKHYLR KHVTEKNHKC DTCSKAYAAE VDLKAHLKIC GKKKHKCSCG  540
MKFKKKYDLN LHMDHYCSAR RLNGATNHSS RNDMGNNSAN VTRNNNTGFM IGSTLSYPPT  600
FNMERNSDRI TINQNNITLT PQISSVQTPF NSYPTISHYE PQLYDIVANQ GSLMTNHSIG  660
SNSGQTLQAS YFPSIQQNQQ DQNKFGEGSY MQMLMGNNVS VDNFEVDNNF NGGSYYGQEG  720
SDSYIIQSVH NTSLNAMMDN GYGGGAGSFN QAYGQGYCG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	4e-49	C2H2 family protein