PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004432.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 178aa    MW: 19672.5 Da    PI: 8.0524
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004432.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.41.2e-25957149
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           krie+ks rqvtfskRr+g++KKA  LSvLCd+++avi+fs  gklye 
  Cse_sc004432.1_g030.1  9 KRIEDKSSRQVTFSKRRTGLMKKARHLSVLCDVDIAVIVFSALGKLYES 57
                           79*********************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MGRKKLEIKR IEDKSSRQVT FSKRRTGLMK KARHLSVLCD VDIAVIVFSA LGKLYESCSG  60
SSSNRFIFID VDIRVLGISV WYGDGDVGSL ESLMETQQKF MMNKGKIPDQ MDSCNMIGIL  120
NSNSPEEKKL TADKEELDKQ VASAKQLQND DGGGGLNDLA TNQTNSPQHL VTLPLFNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.23e-26MIKC_MADS family protein