PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004512.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

M-type_MADS

Protein Properties

Length: 379aa MW: 41699.5 Da PI: 4.4549

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004512.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.4	1.4e-21	21	69	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie+++ rqvtfskRr+g++KKA+EL+vL++ae a+++ s+ g+ y + Cse_sc004512.1_g010.1 21 KKIEETTSRQVTFSKRRTGLFKKASELCVLTGAEMAILVQSPGGHCYAF 69 68*******************************************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MNVSGVYTMK KNPGRKKIPI KKIEETTSRQ VTFSKRRTGL FKKASELCVL TGAEMAILVQ 60 SPGGHCYAFG HPSVDAVIDR YMNNTNDDNN ASMSSKQPSL TEDNQHYAEL SIGIPWYEQD 120 IEGLEVEELE QYLAALVELK RKVLVRADDL ANMESFWRGI KINRLDFGDG IKIENNTMNG 180 PSNGLDFGDG IKFENNTMNG PSNGLDFGDG IKIMNNTMNG PTNGLEFGDG IKFDNNTMNG 240 PTYGLDFGDG IKFEKNTMNG PTIGLDFGDG IKFEKNTMNG PTIGLDFGDG IKFENNTMNG 300 RTSNLDFGDE IKIMNNTMDV PANGLDFGDG IKFQNNAIIG PTNAPDFRDG NNHENNTMNG 360 LTNDHLNYGD LGLDLDHLL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MNVSGVYTMK KNPGRKKIPI KKIEETTSRQ VTFSKRRTGL FKKASELCVL TGAEMAILVQ  60
SPGGHCYAFG HPSVDAVIDR YMNNTNDDNN ASMSSKQPSL TEDNQHYAEL SIGIPWYEQD  120
IEGLEVEELE QYLAALVELK RKVLVRADDL ANMESFWRGI KINRLDFGDG IKIENNTMNG  180
PSNGLDFGDG IKFENNTMNG PSNGLDFGDG IKIMNNTMNG PTNGLEFGDG IKFDNNTMNG  240
PTYGLDFGDG IKFEKNTMNG PTIGLDFGDG IKFEKNTMNG PTIGLDFGDG IKFENNTMNG  300
RTSNLDFGDE IKIMNNTMDV PANGLDFGDG IKFQNNAIIG PTNAPDFRDG NNHENNTMNG  360
LTNDHLNYGD LGLDLDHLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	9e-27	M-type_MADS family protein