PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004533.1_g060.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25464.3 Da    PI: 9.7007
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004533.1_g060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.28.1e-222063649
                           HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           k   qvtfskRr g++KKA+EL++LC++e+a+++fs+ gk++ +
  Cse_sc004533.1_g060.1 20 KNHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPAGKVFSF 63
                           56679************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MAKKPSLGRQ KIKIAKIQIK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IVVFSPAGKV  60
FSFGHPKVES VVDRFLLARN SNLINSTSLH LVEAHRIASI PELNMQLTLM VNELEAEKKR  120
TEALDEMRKT SRSQFWWEAP IEDMSLHELE QLKDSMEELK KIVAIQANQL FTENSNSLSI  180
FGTNNNSIRG GVDHYEMKPT PIIPSSSGAS HVQNYGYGHG LFGSFVH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-55M-type_MADS family protein